Populus nigra (Lombardy poplar): 133699266
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Entry
133699266 CDS
T10372
Name
(RefSeq) uncharacterized protein LOC133699266
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133699266
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133699266
03041 Spliceosome [BR:
pnz03041
]
133699266
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
133699266
Spliceosome [BR:
pnz03041
]
Complex B
Other components
Prp19-related factors
133699266
Complex C
133699266
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_19
TPR_15
TPR_12
ARM_TT21
UTP6_C
Motif
Other DBs
NCBI-GeneID:
133699266
NCBI-ProteinID:
XP_061978444
LinkDB
All DBs
Position
7:complement(19987360..19992434)
Genome browser
AA seq
908 aa
AA seq
DB search
MSISKELYPSQDDLLYEEEILRNPFSLKLWWRYLIARRESPFKKRFIIYERALRALPGSY
KLWHAYLVERLDIVRNLPITHPQFETLNNTFERALVTMHKMPRIWIMYLQSLIRQKLVTR
TRRAFDRALCALPVTQHDRIWELYLSFVSQEGFPIETSLRVYRRYLMYDPSHIEDFIEFL
LNSGLWQEAAERLASVLNDDQFYSIKGKTKHSLWLELCDLMTRHAKEVSGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMTTVVTVRDFSVIFDAYSQFEESMV
AIKMEKMDLSDDEENEVEENGIELDEDVRLDWSSKFEKKLLNGFWLDDDNDVDLMLARLE
YLMDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRTVDPMKAVGKPH
TLWVAFAKLYEDHNDLVNARVIFDKAVQVNYKTVDNLASVWCEWAEMEIRHRNFKGALEL
LRRATAEPSVEVKRRVAADGDEPVQIKVHKSLRLWAFYVDLEEGLGTLESTRAVYERILD
LRIATPQIIINYAWLLEEHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTK
LERARELFEHAIEMAPADSVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNNEKLSMY
EIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKTMCLKYADLEKNLGEIDRARGIYVFA
SQFADPRSDLDFWNQWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQKDQR
LNIDDAKDKLKQAGLPEDEMAALERQLAPAINKTTARDSSRTVGFVSAGVQSQSDGGMQV
TANQEDIELPEESDSEDDEKVEIAQKDVPSAVFGGLAGKREEPEKDDAKDGGSRLGALER
IKRLKRGG
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatttccaaagagctgtacccttctcaagatgatcttctctacgaagaagaaatc
ttgagaaaccctttttctttgaagctctggtggcgctatttgattgcccgaagagaatcc
cctttcaagaaacgcttcattatttatgaacgagctctcagagcgttgcctggaagctac
aagctctggcatgcttatttggttgagcggctcgatatagttcggaatttgcccattact
catcctcagtttgaaactcttaataacacttttgagagggctttggttactatgcataag
atgcctaggatctggattatgtatttgcagagtttgattcgtcagaagttagtgacgagg
acgaggagggcttttgatagggctctctgtgcgttgcctgttacacagcacgataggatt
tgggaattgtatttgagttttgtgagtcaagagggttttcctattgagacctctcttagg
gtttataggaggtatttgatgtatgacccgagtcatattgaagattttattgagtttttg
ttgaattctgggctttggcaagaggctgcagagaggttggcgtcggtcttgaatgatgat
cagttttattcaattaaggggaagaccaagcatagcttgtggcttgagttgtgtgatttg
atgactaggcatgcgaaggaggtttcagggttaaacgtggatgcaattattaggggtggg
attaggaagtttacagatgaggttgggaggctgtggacctcgcttgctgattattatatc
aggagggaattgtttgagaaggcaagggatatttttgaggaggggatgactactgtggtt
actgttagggatttcagtgttatttttgacgcttactcacaatttgaagagagtatggtt
gctatcaagatggagaaaatggatttgagcgacgatgaggaaaatgaggttgaagagaat
ggtatcgagttggatgaggatgttcggttggattggagttccaagtttgagaagaagtta
cttaatggcttttggttagatgatgacaatgacgtggatttgatgctagcacgtctggag
tatctaatggatagaagaccagaattagcaaatagtgtgcttcttcgacaaaatccacat
aatgtggagcagtggcataggagggtcaagctatttgagggtaatccaacgaagcaaatt
ctgacgtatactgaagctgtgaggacggtggatccaatgaaagcagtggggaagcctcat
actttgtgggttgcatttgcaaaattgtacgaggatcacaatgatcttgtcaatgcaagg
gtaatttttgacaaggcagtgcaagtgaactacaagactgtcgataatttggcaagtgtg
tggtgtgagtgggctgaaatggaaattagacacaggaatttcaaaggtgcgcttgagctg
ttgagacgggccaccgcagaaccatcagttgaggtcaaacggagagtggctgctgatggg
gatgaaccagttcagataaaggttcataagtccttgagactctgggctttttatgttgat
ttggaggagggcctgggtaccttggagtccactcgagcagtgtatgaacggatactggac
ctgcgcatagccaccccacaaatcatcatcaattatgcttggcttctagaggaacataaa
tactttgaagatgcattcaaggtatatgaaaggggagtcaaaatattcaagtatcctcat
gtgaaagacatttgggtcacatatctctcaaagttcgtgaagagatatggcaagacaaaa
ctagagcgggcgagggagttgtttgaacatgctattgaaatggctcctgctgactcggtg
aaaccgttgtatcttcaatatgcaaagctagaagaggactatggtttggcaaagcgagcc
atgaaggtatacgatcaagcaaccaaggctgttccaaacaatgaaaaactgagcatgtac
gaaatttatattgctcgtgcagctgagatatttggtgttccaaaaacaagggaaatatat
gagcaagcaatagagtctggccttccagacaaagatgtgaagacaatgtgcttgaagtat
gctgacttagagaagaaccttggagaaattgaccgtgcacgtggcatatatgtatttgca
tcccaatttgctgatccacgatctgatttggatttctggaaccaatggcatgagtttgag
gttcaacatggaaatgaagataccttcagagaaatgttgcgtattaaacgaagtgtgtct
gcaagctatagccagacacattttattcttccggagtatttgatgcagaaggatcagaga
ctgaacattgatgatgccaaagacaaattgaaacaggctgggctccctgaagatgaaatg
gccgctctagagaggcaattagctcctgcaatcaataaaaccactgccagagatagcagc
aggacagtgggctttgtgagtgctggagtgcaatctcagtcggatggagggatgcaggtt
actgcaaaccaggaagacattgagcttccagaagagagtgactctgaagacgatgaaaaa
gttgaaattgcacagaaggatgttccctctgctgtgtttggtggattggctgggaagagg
gaagagcctgagaaagatgatgcaaaggatggtggcagtcgtcttggtgccctcgagagg
attaagagactaaaacgtggaggatga
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