Populus nigra (Lombardy poplar): 133699516
Help
Entry
133699516 CDS
T10372
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133699516
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pnz03021
]
133699516
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133699516
Transcription machinery [BR:
pnz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
133699516
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
133699516
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
133699516
NCBI-ProteinID:
XP_061978770
LinkDB
All DBs
Position
7:complement(21156871..21164067)
Genome browser
AA seq
1052 aa
AA seq
DB search
MQPTKLLNPKAATKAAAAAAVTTTMPNELLPQKPSASSVLDKFRSLLKQRQGSAVEDDGG
GDGASLRMEDVVEIYETVLNELTFNSKPIITDLTIIAGEQREHGEGIADVLCARIVEAPV
DQKLPSLYLLDSIVKNIGREYIRHFSSRLPEVFCEAYRQVDPSLYPSMRHLFGTWSSVFP
SSVLHKIETQLHFSPQVNDQSSSLTSFRASESPRPPHGIHVNPKYLRQLDHSTADDTGWS
IQTYKAKHVIQSLQNVQHTKGTSSNLKIYGKKPAVGYDEYESDQAEAMSSQVGLGRTSLT
LGSNKLQPSSTSRLARRLSPSTTGAERPLSSEIDDFAVGNSPRRFVEGLSPSHPLFDYGH
SRAIVREEEAHELRRNNYSDDNHNRFEPSARYRLSNGLEHQGPRALIDAYGDDRGKRITS
SKPLHIEQLAVNGVHNKVASRSWQNTEEEEFDWEDMSPTLSEHGRSNDFLPSSIPPFGSV
VPRPTFGRLSSIHVESDIRSNRSSLAPMAFVDGSSNIAEEAVSILGSGRGSTSKIPGFRN
ERNQILGSRHHQEAWNFPPRIHQSAHLLNSKGRGRDFQMPLSGSGVSSLGGENYSPLAEK
LPDIDAQLNRPPAITSRWGSNIDSTSSGTWSSVAPPSSGVWPPVNARKSLPPPVHRIFPP
PEQSRSQFDPINASSTVINQVLQKGSVMPEQPFNSFENKDYNSMKPTPMSNQHAALNQQN
QAHVNPFQPQQLPSHEARENFHPSGVTSMPPRPLAPPLNHGYNTHGHSTAISMVPSNALP
AVQLPLPVNNIPNMLHSQVGVRPPLPPGPPPQMMPFPQNAGSGVPGQPSGSAFSGLFNSL
MAQGLISLTKQTPVQDSVGLEFNADLLKLRYESAISALYGDLPRQCTTCGLRFKCQEEHS
THMDWHVTKNRMSKNRKQKSSRNWFVSASMWLSGAEALGTDAAPGFLPTETTVEKKDDDE
MAVPADEEQNTCALCGEPFDDFYSDETEEWMYRGAVYLNSSNGSTAGMDRSQLGPIVHAK
CRSDSSVVPPEDLGHDEGGNSEEGNQRKRMRS
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atgcaacccacaaaactcctaaaccctaaagccgccaccaaggcggctgctgcggcagcc
gttaccaccaccatgccaaatgaactgctgccacagaaaccatcagcatcgtcagttctt
gacaagttccggtctttattgaagcaacgacaaggatcagcggtggaggacgatggtggt
ggtgacggggcgagtttgcgtatggaggatgtggtggagatttatgagacggttttgaat
gaattgacgtttaattcaaaacctataattacagatttgactattattgctggagaacag
cgggagcatggtgagggtattgctgatgttctctgtgcccgcattgttgaggcccccgta
gatcaaaagctgccttcattatatcttctagatagcattgtcaagaatattggccgtgaa
tacattaggcacttctcatcccgtttgcctgaggttttttgtgaggcatacagacaagtt
gaccctagcttatatccttcaatgcgccacctttttggcacatggtcctcagtgtttcca
tcttctgtacttcacaagattgagactcaacttcatttttctccacaagttaatgatcag
tcatcaagcttgacttcctttagagcttctgaatcacccagaccacctcatggcatacat
gtgaacccaaaatacttgcgtcagctggatcattcaactgcagatgatacagggtggtca
atacaaacatacaaagctaaacatgtaattcaatctttgcagaatgttcagcacactaag
ggaacttcttcaaatctgaaaatatatggtaaaaaacctgctgttggatatgatgaatat
gaaagtgatcaagcagaggccatgtcttcacaggttggactgggccgtacatctctcact
cttggatctaataagctgcaaccatcttcaacttccaggcttgcaagacgcttgtcgcct
tcaacaactggagccgagaggcctttatcttcagaaattgatgactttgcagtagggaat
tctcctcgaaggtttgttgaggggctgtccccatctcatcctctatttgattatggacac
agcagagccattgtcagagaagaggaggcacatgaattaagaagaaataactattctgat
gataaccataaccgatttgaaccttctgctagatataggcttagcaatggacttgaacat
caaggacccagagctttaatagatgcatatggggatgatagggggaaaagaattacaagt
agtaaacctctgcatattgaacagttagccgtaaatggtgtgcacaataaggtagcttca
agatcatggcagaatactgaagaagaggaatttgattgggaagatatgagccctactttg
tcagagcatggtaggagtaatgatttcttgccatcatctattccaccttttggaagtgtt
gttccaaggccaacctttggaagactaagttctatccatgtggaatctgatatcaggagc
aatcgatctagtctggctccaatggcatttgtggatggctcctctaatattgctgaagaa
gcagtctcgattctgggttctggccgtggatcaacaagcaagattcctggattccgaaat
gagagaaatcagatcttgggttcccgtcatcatcaagaagcttggaattttccacctcgc
atccatcagtcagcacatctcctgaattctaaaggaagaggacgggatttccagatgccc
ttatctggaagtggtgtgtcttctttgggtggtgagaattactctccactggctgaaaaa
cttccagatattgatgcacagcttaataggcctcctgccattacatcaagatggggctct
aatattgactctactagttcagggacctggtcaagtgttgcgccaccatcatcaggggtc
tggcctccagtaaatgcacgaaagtctctgccacctcctgtgcatcgtatttttcctcca
ccagagcagagtagaagtcagtttgatccaataaatgccagcagcactgtcataaatcag
gttttacaaaagggttcagttatgcctgaacaaccatttaatagttttgagaacaaagat
tacaattcgatgaagccaacaccaatgtctaatcagcatgctgctttgaatcagcaaaac
caggcacatgtaaatccttttcagccacaacaacttccatctcatgaagcccgagagaat
tttcatccatctggggtaacttcaatgccacctcgtcccctggcaccaccactgaatcat
ggatacaacactcacgggcatagcactgccattagtatggttccttcaaatgcattacct
gctgtacaactgcctttaccagtcaacaatattccaaatatgttgcattcacaggtgggg
gttcggccacctttgccacctggtcctcctccccaaatgatgcctttccctcagaatgct
ggttcaggtgtccccggccaaccatctggcagtgcattttcgggtttgtttaactctctc
atggcacaaggtttgatctcattgacaaaacaaactcctgtgcaggactctgtgggactt
gagttcaatgctgaccttctcaagctgcgctatgaatctgcaatcagtgcattgtatggt
gatctgccaagacaatgcacaacatgtggccttcggttcaagtgtcaagaagagcacagt
actcacatggattggcatgttactaaaaaccggatgtctaagaaccggaagcagaaatct
tctcgcaactggtttgtaagtgcaagcatgtggctcagtggtgcagaggcattgggaact
gatgcagctcctggttttttgcccactgagaccactgtagagaagaaggatgatgatgaa
atggctgttcctgctgatgaagagcagaatacatgtgcattatgtggagagccttttgat
gatttctacagtgatgaaactgaggaatggatgtatagaggagctgtctacctgaattca
tctaatggatcaacagcaggcatggataggtctcagttaggtcctatagtacatgctaaa
tgcagatccgattctagtgtggttccccctgaagatttaggacatgatgaagggggaaat
tctgaagagggaaatcaaagaaaacgaatgcggagctaa
DBGET
integrated database retrieval system
