Populus nigra (Lombardy poplar): 133700355
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Entry
133700355 CDS
T10372
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03013
Nucleocytoplasmic transport
pnz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133700355
03015 mRNA surveillance pathway
133700355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133700355
Enzymes [BR:
pnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
133700355
5.6.2.5 RNA 5'-3' helicase
133700355
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
133700355
mRNA cycle factors
Common to processing body (P body) and stress granule
133700355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
NAT10_TcmA_helicase
NPHP3_N
UvrD-helicase
nSTAND3
ATPase
PhoH
SRP54
AAA_16
AAA_22
AAA_25
AAA_32
Ribosomal_S13_N
Peptidase_S66
AAA
Motif
Other DBs
NCBI-GeneID:
133700355
NCBI-ProteinID:
XP_061979839
LinkDB
All DBs
Position
8:complement(11469133..11482565)
Genome browser
AA seq
1269 aa
AA seq
DB search
MDNQDNNLYETASQPDTATDAYTFLEFNTQGESDFDYPEFRSPVAWPTPSDSLGATSSAV
DPTSSDHRTAASTPDLHSDSPAASPVASKSAARGGGANSGTQGVVEGLVASIGGLNFEET
GDDDGYEFGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRA
KHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNVNALKDMN
WDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDATLEDLEKP
GVDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRVA
YFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVD
VNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVENQTVRNALPRRFG
APGLPELNASQVLAVKNVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSN
VAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKD
EQGELSSSDEKKYKALKRATEREISQSADVICCTCGGAGDPRLANFRFRQVLIDESTQAT
EPECLIPLVLGAKQVVFVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQY
RMHPCLSEFPSNNFYEGTLQNGVTVNERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGT
SYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIE
VASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQ
PLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFLGGGPGIVPNDSFGSV
ASASSNADRRNSRARGSYLSPGPPNGTHKPGVAGFPMPRVPIPPFHDGPPSQPYAIPTRG
AVHGPIGAVPQVPPPGSRGFSAGRGNAGAPIGSHLSHQQGNQQGIGNIGSFNFPALENPN
SQPSVGGPLSQPGYVNNIPVQGSSQTFRDGFSMGGMSQEFLGDDFKSQGSHVPYNVADFS
TQASQGGYAVDYVTQGAQGGFPGNFLNQNSQPGYSRFGSGNDFMSQDYMAHGSQGLFTQV
GYNDPSQDDASQSHFGIANPNQLQSQGLMNSLYSQPFGHYNTQQLNLQAPQQQPQQGQGT
QNQKIHYNG
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atggataaccaagacaataacctgtacgaaacggcctcgcagccagacacagccacagac
gcctacaccttccttgaattcaacacacaaggcgaatccgattttgactaccccgaattc
cgctctccggtggcctggcccactccttctgattctctcggcgccacctcctccgccgta
gaccctacctcgtccgaccaccgtaccgccgcttccacccccgatctccactctgattct
cctgctgcgtctcctgtcgcgtcaaaatctgctgcgcgtggcggtggagcgaacagtggg
acccagggggtggtggaggggttagtggcgagcataggagggttgaattttgaagagacg
ggagatgatgacgggtatgagtttgggaaaggggattttacggagcacgcttgcaggtac
tgcggggtttcgaatcctgcgtgtgttgtgaggtgtaatgtaccgtcatgtaggaagtgg
ttctgtaattcaagagggaatacatctggttcgcatattgttaatcatctggttcgagca
aagcataaagaagtctgtctccataaagacagccctcttggagaaacaatacttgagtgc
tacaactgtggttgccgaaatgtgtttcttcttggatttatatcggccaagacagagagt
gttgttgtcctcctctgcagggagccttgcttgaatgttaatgcgctgaaggacatgaat
tgggacctgagccagtggtgcccccttattgatgataggtgttttctacaatggcttgtg
aagatcccatctgaacaagagcagttgagggctcgccaaattagtgctcaacaaataaat
aaagtagaagaactttggaaaactaatcctgatgccacccttgaagatcttgagaagcct
ggtgttgatgatgagccacagcctgtggcattgaagtatgaagatgcatatcagtaccaa
aatgtatttgctccacttattaagcttgaagctgactatgataaaatgatgaaagagtct
caaagcaaggataatgtcactattcgatgggatattggccttaacaagaagcgtgttgca
tattttgtatttccaaaggaggacaatgagttgcgtcttgtacctggtgatgagttacga
ctgcgctattctggagatgcagctcatccagcatggcaatcagttgggcatgtgatcaag
ctaactgcacaagaggaggttgcacttgagcttcgtgctagtcagggagttcctgttgac
gtgaaccatggttttagtgttgattttgtttggaagagcacgagctttgatcggatgcag
ggagcaatgaagacttttgcagtggatgaaactagtgtcagtgggtatatatatcaccac
ttgttgggccatgaggttgagaatcaaacagttcgtaatgcattgcctcgccgttttggg
gctcctggtcttccagagctgaatgcatcccaagttcttgctgtgaagaatgtcctccaa
aagcccattagtttgattcaaggtccacctggcacaggaaaaactgtcacttctgcagcc
attgtatatcacatggccaaacagggccaagggcaggttttggtgtgtgccccaagtaat
gtggctgtagatcagctagctgagaagataagtgccactggcttaaaggtggttaggcta
tgtgcaaaatcaagggaagctgttagttctcctgttgagcatctcacccttcactatcag
gtcagacatctggacacttcagagaaaagtgaacttcacaagttgcaacaattgaaagat
gaacaaggggaactgtccagcagtgatgagaaaaaatacaaagcactgaaacgagcgact
gaaagggaaatttctcaaagcgctgatgtcatctgttgcacttgtggtggtgctggagat
cctcggttggcaaattttaggtttcgccaggtacttattgatgagtcaactcaagcgaca
gaaccagagtgtcttattcctttggtacttggggcgaagcaggttgtttttgttggtgac
cattgccagcttggtcctgtcattatgtgcaagaaagctgctcgtgctgggttagcccag
tctctctttgaacgccttgttttacttggtgtgaaaccaattagattgcaggttcaatat
cgcatgcacccgtgtctttctgaatttccatctaacaacttttatgaaggcactctacaa
aatggagtgactgtcaatgagagacaatcgtcaggcattgattttccttggcctgtgcct
aatcgtcctatgttcttctatgtccagatgggacaagaagagataagtgccagtgggaca
tcctatctaaatcgtacggaggctgcaaatgttgaaaaaattgtaactacatttttgagg
agcggtgtagtcccgagccagattggagtgataacaccttatgaggggcagagagcatat
attgtgaactatatgtcaagaaatggtgccctcagacagcaactatacaaggaaattgag
gttgcaagtgttgattcatttcaaggaagagaaaaagattacattattttgtcttgtgtt
aggagcaatgaacatcagggcattggatttcttaatgatcctcggaggctgaatgttgct
ctaactcgtgctcgatatggtattgtcatcctgggaaaccctaaagttctaagcaagcag
cctttgtggaatagcttattaactcactacaaggaacacgaatgtttggttgaaggacct
ttgaataacttaaagcagagtatggttcaatttcaaaagcccaaaaagatttataacgat
cggagactgtttttgggtggtggacctggaattgtcccaaatgatagttttgggtctgtt
gcctcagctagctcaaatgctgatagaagaaactcccgtgccaggggttcttatttgtca
ccaggcccaccgaatggtacccataagcctggtgttgctgggtttccaatgcctcgggtc
cccattccaccatttcatgatggtccaccttctcaaccatatgctattcctactcgtgga
gctgtgcatgggcccatcggagctgttcctcaagtccctccacctggaagtcgaggtttt
agtgctgggcgtggcaatgctggtgcacctattggaagtcatctctctcaccagcaaggc
aaccagcaaggcattgggaatattggatctttcaactttcctgccctagagaatccaaat
agccagccatctgtgggtggtcccctatctcagcctggatatgttaataatattccagtt
caagggtcgagccaaaccttccgtgatggattttccatggggggtatgtcccaggagttc
ttgggcgatgacttcaaaagccagggatcacatgttccttacaatgttgctgatttctca
actcaggcatctcaaggtggatatgctgtcgattatgttacacaaggggcacaaggtggg
tttccaggcaacttcttgaatcagaattctcaacctggatactctcgttttggttctgga
aatgatttcatgtctcaggattacatggctcatggatcacaaggtctattcactcaggtt
ggctataatgatccctcgcaagatgatgcatcacaaagccactttggcatagccaaccct
aaccagcttcaatcacagggcttgatgaattctctttactctcagccctttggccactac
aacactcagcagctgaacttgcaggctccacaacagcagcctcagcagggtcagggtacc
caaaaccagaaaatccattacaatggttga
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integrated database retrieval system
