Populus nigra (Lombardy poplar): 133700821
Help
Entry
133700821 CDS
T10372
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 13-like isoform X1
KO
K15164
mediator of RNA polymerase II transcription subunit 13
Organism
pnz
Populus nigra (Lombardy poplar)
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pnz03021
]
133700821
Transcription machinery [BR:
pnz03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
CDK-module
133700821
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MID_MedPIWI
Med13_N
Med13_C
Motif
Other DBs
NCBI-GeneID:
133700821
NCBI-ProteinID:
XP_061980486
LinkDB
All DBs
Position
8:21689715..21705314
Genome browser
AA seq
1959 aa
AA seq
DB search
MWTNVFKIGGLHHVSWFQFLPSESDLNSLPDKSVKVEQKNFATWLVLSAHFQLQKEGFLS
TWTNSFVGPWDPSQGLHNPDEKIKLWLFLPGRCSSVVDKAQAAVSRLRVVASGVWVAPGD
SEEVAAALSQSLRNCIERALTGHSYMRFGDVFLKYHPSQSEGLSRKGRPTVEFIFSASEE
AIFVHAIISAKHIRALSNGDVERVLKQSSSNSSYRLPVIASPHGIRGSLTGCCPNDLVRQ
VFMSSGKSKTLNGFIGQPYHVSQGPGCQLMEQNCYVEITLGCPRSESDKELETNLQSTKN
SSKNHIAESPAVRRGDQKVSPDHLSAYEKAFIYPVEAIVVPVLPKSFARSSLKRFWLQNW
IGPSLPGSSFFMHCGGDTDFLEGSWIESNGLRMQHSYNSSSNSNSSSISSIISGSSDSDY
KMTTGELEADGDSLSCRQSGLSSNDQMEIDDLKLGSKRPRTGMTEPYGPVGTVKNAPLQE
FGSVEVNASAITGMANEQIGSRWDWDDDRGAGMDIQALLSEFGDFGDFFENDDLPFGEPP
GTAESQALMFSGQDCGEVANTPIGVMDVVDQMLPPAAFPSFESFNPSPAVAIDESASKSQ
EATHGALALVPVNCTPPSSSGEFDYLIKAEALLTLAPEYGAVETPTSEFSSSIFRRPYCP
KSRQVESSNPSSNKYAYGATPPPSPFFEGSNEKTGMQVNLKTGAGRNDTKKYYTLVESGK
VHLDRRTFIFNESHPTSEAMVPSPLLTSNSSNTAQRNMSDGILGAENFLFSMKTVLATEV
ECIMFQASMCSMRHMLLSYGNPTPVNLSRLSGSTVLNQLHGDASTMTDSISGRYEVKKKE
SIPVRIAGDMDGGLLDGHLNAPVGVWRSVGVPKLTKHTSSSPNIEVSASLPHHSFSEEGI
LSYRQRQQPLQELLDGMALLVQQATSFVDVALDADCGDGPYGWLALQEHWRRGFSCGPSM
VHAGCGGALAACHSLDIAGVELVDPLSADIHSSAVISLLQSEIKTALKSAFGNLDGPLCV
TDWCKGRFQSGDGATTCDGPIGESTFTGCKDSSIVTLPVGEPMSPALSCAAGSSSLKASS
TLDGAKVDETSQRRSNQEIEPELRFRIKPTVFVLPSPAILVGYQDDWLKTSASSLQLWEK
APFEPYASPKPISYYVVCPDIDPLTSAAADFFQQLGTVYETCKLGTHSPQSLGNHMEMDA
GKSLYTGFVLLDCPQSMKIESSNASLVGSISDYFLSLSNGWDLASYLKSLSKAVKALKIG
PSLLANPKEGSSSSCMVIYVVCPFPEPAAVLQTVIKSSVAIGSIIPPADRERRSMLLGQV
RKALSSLAAVDDASASNVLVLSGFSTPKLVLQIVTVDAIFRVTSPALNELIILKETAFTV
YNKARRISKGSSNDVQSSSASSRSHSALTQMSSVPAMWNSLPREADIDSRLRAGTWDNSW
QTIRTGSLTCDPNRNGDFSLQDEIHYMFEPLFILSEPGSLEHAVTPAVFGNLGSESLKMQ
SDDSSGSFMQSASSAGSVDTGSSSQHDGSEPTGFGSSHQKALPSLHCCYGWTEDWRWLVC
IWTDARGELLDSHIFPFGGISSRQDTKGLQCLFVQVLQQGCQILQSCSSPDTGSVKPRDF
VITRIGSFFELEYIEWQRAIYSVGGSEVKKWPLQLRRSMPDGMAASSNGASLQQQEMSLI
QERTLPSSPSLLYSPLLKASGYMKGGLGQPSSRKQLMGGHTVVDNSRGMLQWVQSITFVT
ISVDHSLHLMFQADMPSPGGNGSSVGPSIYREGISPVKSLGSTSASYILIPSPSMRFLPP
TPLQHPTCLTAESPPLAHLLHSKGSAIPLSTGFVVSKAVPSMRNDYRSDAREEWPSVLSV
SLIDYYGGNNMTEDKMYRGIMKQGGRTLGTDGKDLEIGTQLILENIAAELQALSWMTVSP
AYLERRTALPFHCDMVLRLRRLLHFADKELSSQPGRSQV
NT seq
5880 nt
NT seq
+upstream
nt +downstream
nt
atgtggaccaatgtattcaaaattggtggtctgcatcatgtatcatggttccagtttctc
cctagtgaatctgatttgaactctttacctgataagagtgtaaaagtagagcagaaaaac
tttgctacatggcttgtgctctcagctcattttcagttgcagaaggaggggtttctaagc
acatggaccaattcctttgttggaccttgggatccatcacagggtctacataatcctgat
gagaaaataaagctctggcttttccttcctggacgttgctcatctgttgttgataaggca
caggctgcagtgtctagattaagagttgttgcatctggagtttgggtggctcctggggac
tctgaagaggttgcagcagccctttctcagtctttgaggaattgtatagagagagcattg
accgggcattcatacatgaggtttggagatgtatttttaaagtaccatccatctcaaagt
gaaggactttccaggaaaggacggcccacagttgaattcatcttttctgcctctgaggag
gcgatctttgtgcacgcgataatatctgcaaagcatatccgtgcactttcaaatggtgat
gtggaaagagttttaaaacagtcttcttctaattccagttataggcttccagtgattgct
tctccccatggaattcgtggttcactgacaggatgttgtccaaatgatcttgtcaggcaa
gtgttcatgagttctggcaagtctaagacattgaatggatttattggccagccatatcat
gtttctcaagggcctggctgccagctgatggagcaaaattgctatgttgaaattacacta
ggttgcccaaggtcagagagtgacaaggaattggaaacaaacttgcagtcaactaagaat
tcatccaagaatcatattgcagaatctcctgcagtaagaagaggtgatcagaaggtatca
ccagatcacttatcagcttatgagaaagcatttatttatccagttgaagcaattgttgtc
ccagtcttgccaaaatcttttgccaggtcttctttgaaaagattttggctacaaaattgg
atagggccatcactgcctggttcatcattctttatgcactgtggtggtgatacagatttt
ctggaaggatcttggattgaatctaatggattacgtatgcagcacagctataacagtagt
agcaatagtaatagtagcagcatcagctccataattagcggctctagtgatagtgattac
aagatgaccaccggtgagcttgaggctgatggtgattccttgtcatgcagacaatctggt
ttatcttccaatgatcagatggaaattgatgacctcaaattgggttctaagcgtcctcga
acaggaatgactgagccatatggtccagtgggcacggttaaaaatgctcctttgcaagag
tttggttcagttgaagttaatgcttcagctataacaggaatggcaaatgagcagattgga
tctcgttgggattgggatgatgacaggggtgcaggaatggatatccaagctcttctctct
gaatttggtgattttggcgacttctttgagaatgatgatctgccttttggagagcctcct
ggaacagcagagtcacaggctcttatgttttctggtcaagattgtggtgaagttgctaac
actcctataggagtaatggatgttgtggatcagatgcttccgccagcagctttcccatct
ttcgaaagttttaatccatctcctgcagtagccatagatgaaagtgccagcaaaagccaa
gaagccactcacggtgctctggcattagttccagtgaactgcactccaccatcttcttca
ggtgagtttgattatttaatcaaagccgaagctttgttgacacttgccccagaatatggt
gcagttgaaacccctacaagcgaattctcctcatcaattttcagacgcccatattgtcca
aaatctcgccaagtggagagctcaaatccaagttcaaataagtatgcatatggtgcaaca
ccaccaccttctcctttctttgaaggatcaaatgagaaaacaggtatgcaggtgaatctg
aaaacaggtgctggaaggaatgacacaaaaaaatattacactcttgtggaaagtgggaaa
gtgcatcttgatagaagaactttcatatttaatgaaagtcatcctacaagtgaggcgatg
gtgccatctccattattgacttccaattcctcaaatactgcccagaggaatatgagtgat
ggcatactaggagctgaaaatttcttattttctatgaagactgttctggcaactgaagta
gaatgcattatgtttcaagcttccatgtgcagtatgcgacacatgctgttgtcttatggt
aaccctacacctgtaaatttgagtaggttaagtggaagcactgttttgaatcagctgcac
ggtgatgcaagtaccatgacagacagcatatctggcaggtatgaagtgaagaaaaaagaa
tctataccagttagaatagctggggatatggatgggggattgctagatggacacctcaat
gcacctgtaggtgtttggcgctctgttggagttcctaaattaacaaaacatactagttca
tcaccaaatattgaagttagtgcatccttgccacaccattcattcagcgaggaaggaatt
ctctcttataggcaaaggcagcagccgctgcaggagcttttggatggcatggcattgctt
gtccaacaagctacttccttcgttgatgtggctctggatgcagattgtggtgatggtcct
tatggttggcttgcattacaagaacattggaggcgtggattttcttgtgggccttccatg
gtccatgcaggttgtgggggggctttggctgcttgtcattctctggacattgctggcgta
gaactagttgatccactttctgctgatattcattcttctgcagtgattagcttgctgcag
tctgaaattaaaacagccttaaaatctgcatttgggaatttggacggtccattatgtgtc
actgattggtgcaaaggccgctttcagtcaggtgatggagcaaccacatgcgatggaccc
attggggagtccacttttactggatgcaaagattcaagcattgtaacactgcctgttgga
gaaccaatgagcccagccctctcttgtgctgctggatcatcgtccctcaaagcatccagt
acattggatggagctaaagtggatgagacatcccaaaggagatcaaaccaggaaatagag
ccagagctgcgtttcaggataaagccgacagtgtttgttcttccctcacctgctattctt
gttgggtaccaggatgattggcttaagacatcggcaagctctttacaactctgggaaaag
gctccttttgaaccatatgcttcaccaaaaccaattagttattatgttgtatgtccagac
atcgatccccttacttctgctgctgcagattttttccaacaacttggaactgtttatgaa
acttgcaaactgggaactcattcacctcagagtttgggaaaccatatggagatggatgct
gggaaatctttgtatactggtttcgtactacttgattgccctcaatcaatgaagatagaa
agcagtaatgcatctcttgtgggatcgataagtgattattttctctctctctccaatggt
tgggacctggcgagctatcttaagtctctctcaaaagctgtcaaggctttgaaaataggt
ccatcattattggcaaacccaaaagaaggaagtagcagttcttgtatggttatctatgtg
gtgtgcccctttcctgaacctgctgcagttctacaaactgtcattaaatcctctgttgct
attggatcaatcattcccccagccgatagagagaggaggtctatgttgctgggtcaggtc
aggaaagcattaagcagcttggcagctgtggatgacgcatcagcatcaaatgttctagta
ctttcagggtttagcactcctaaattggtattgcaaattgtgacagttgatgccattttt
agggttacaagtccagctcttaatgagctcatcattcttaaggagactgctttcacagtc
tataataaggctcggcgaatttcaaaaggatcttcaaatgatgttcagtcatcatcagcg
tcaagtagatctcactcggcattaacacaaatgagttctgttccagcaatgtggaattct
ttaccacgagaggctgacattgattctagattgagagccggtacctgggataattcctgg
caaacaataaggactggaagcttgacctgtgatccaaacagaaatggagatttttctctt
caagatgagattcactacatgtttgaaccactttttattctttcagagcctggatctctg
gagcatgctgtcacgcctgcagtttttggtaatttaggctctgaatctttaaagatgcaa
tctgatgatagcagtggaagcttcatgcaaagtgcaagctcagcagggagtgtggatact
ggatctagctctcaacatgatggatctgagcccactggctttggatctagtcatcaaaaa
gcacttccaagtctgcattgctgctatggatggacagaggactggcgttggctagtttgc
atctggacagacgcaagaggagaattgcttgacagccatatattcccttttggtggaatt
agcagtcgccaggatacaaaaggtctgcaatgcctttttgtgcaagttttgcagcaagga
tgtcagatacttcagtcttgctcctctcctgatactggcagtgtaaagcctagagatttt
gtgattactcgcattggaagcttctttgagcttgagtacatagagtggcagagagccatt
tattcagttgggggttctgaggtgaagaaatggccactgcaactacggcgctcaatgcct
gatgggatggctgcaagctctaatggtgcttccttgcagcagcaggagatgagtttaatt
caagaaagaaccctgccttcctcacctagtctattgtatagccctctcttgaaagcatct
ggctatatgaagggtggtttggggcaaccttcttcgagaaaacagcttatgggtgggcac
actgttgttgacaactcaagggggatgcttcagtgggtgcagagcatcacttttgttaca
atttcagtcgaccattctttacatctaatgtttcaggctgatatgccatctcctggagga
aatggcagtagtgttggcccatcaatctatcgggaaggtatctctcctgtcaagtctctt
ggttcaacatccgcatcttacattttgattccatcacccagcatgcgcttccttccccca
acacctttgcagcaccccacatgcctcactgctgaatccccaccacttgctcatctcctt
catagtaagggatctgcaattcctctctccactggtttcgtggtttcaaaagctgtacct
tccatgaggaacgactataggagcgatgcaagagaagaatggccttcagttctttctgtg
agtctcattgattattatggaggtaacaacatgaccgaagataaaatgtatagagggatt
atgaagcaagggggacggactttaggcacagatggtaaagatttagaaatcgggacccaa
ttaattcttgaaaacatcgcagcagaacttcaagccctatcttggatgactgtgagccca
gcatacttggagcgacgaactgctctcccatttcattgtgacatggttttaagactcaga
agactgcttcattttgctgataaagagctctcttcacagcctggtcggtcacaggtataa
DBGET
integrated database retrieval system
