Populus nigra (Lombardy poplar): 133700826
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Entry
133700826 CDS
T10372
Name
(RefSeq) putative E3 ubiquitin-protein ligase XBAT34 isoform X1
KO
K22651
E3 ubiquitin-protein ligase RNF4 [EC:
2.3.2.27
]
Organism
pnz Populus nigra (Lombardy poplar)
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pnz04121
]
133700826
Enzymes [BR:
pnz01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133700826
Ubiquitin system [BR:
pnz04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
133700826
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
zf-rbx1
Drf_FH1
zf-RING_4
Sina_RING
RING_XB3-XBAT31
zf-Nse
zf-RING_10
zf-RING_11
Prok-RING_4
TRAF3_RING
Motif
Other DBs
NCBI-GeneID:
133700826
NCBI-ProteinID:
XP_061980495
LinkDB
All DBs
Position
8:complement(16478866..16480973)
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AA seq
245 aa
AA seq
DB search
MDLLENFDNNMVFMEKAENTMDLLGSVDLLVENLWEAERSYYQHFDLNFPVPVENNIPPY
GPWFPAQPQIIQAEAYGLTRQHQTARDVEVIDDDIAIISPNTFDQARKKARRNPDAEVRE
NINMANQVHAAGSVPQLPGSSQAVPPSQFPGSSQTVPPPQLSGLSLTVPPPHFSGLSQTA
PPPPAPVFCCPICMDEMKEATSTKCGHVFCKSCIEKALAVQKKCPTCRMKCIAKSIFRIF
LPAFL
NT seq
738 nt
NT seq
+upstream
nt +downstream
nt
atggatttactggagaattttgacaacaacatggtttttatggagaaagcagaaaacact
atggatttactggggagtgtggatcttctggttgaaaatttgtgggaagccgagagaagt
tactatcagcactttgatctcaactttccagttcctgttgagaacaatatacctccctat
ggcccgtggtttcctgcccaaccacagattattcaagctgaagcatatggattgacacgg
caacatcaaactgcacgagatgttgaggtcattgatgatgatattgctataatctccccc
aacacatttgatcaagccaggaagaaagctaggagaaatcctgatgcagaagtaagggaa
aatataaatatggccaatcaggttcatgctgctgggagtgtgccccaactccctggatca
tcccaggctgtgccaccatcccagttccctggatcgtcccagactgtgccaccgccccaa
ctttctggattgtccctgacagtgccaccgccccatttttcaggattgtcccaaactgca
ccgccgccaccagcaccagtgttttgttgtccgatttgtatggacgagatgaaagaagca
acatcgacaaaatgtggtcatgttttctgcaagagttgcattgaaaaagcactagctgtt
cagaagaagtgtcctacttgcaggatgaaatgtatagcgaaatccatcttcaggatcttt
cttcctgcatttctttaa
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integrated database retrieval system
