KEGG   Populus nigra (Lombardy poplar): 133700988
Entry
133700988         CDS       T10372                                 
Name
(RefSeq) protein RAE1
  KO
K14298  mRNA export factor
Organism
pnz  Populus nigra (Lombardy poplar)
Pathway
pnz03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:pnz00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    133700988
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pnz03019]
    133700988
   03036 Chromosome and associated proteins [BR:pnz03036]
    133700988
Messenger RNA biogenesis [BR:pnz03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     133700988
Chromosome and associated proteins [BR:pnz03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    133700988
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40_Prp19 WD40 WD40_WDHD1_1st Beta-prop_WDR3_1st Beta-prop_WDR5 Beta-prop_EML_2 WD40_CDC20-Fz WDR55 Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_2nd Beta-prop_RIG_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML EIF3I ANAPC4_WD40 Beta-prop_HPS5 Beta-prop_SPT8 Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_Aladin Beta-prop_IFT140_1st Beta-prop_IFT122_1st Beta-prop_EIPR1 WD40_RFWD3
Other DBs
NCBI-GeneID: 133700988
NCBI-ProteinID: XP_061980719
LinkDB
Position
8:complement(18866387..18872785)
AA seq 349 aa
MSAFGAAATANTNPNKSIEVSHPPSDSVSSLSFSPKANFLVATSWDNQVRCWEITRNGTN
VGSVAKASISHDQPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEI
AWIPEMNCLATGSWDKTLKYWDLRQANPVHTQQLGERCYAMTVRYPLMVVGTADRNMIVY
NLQSPQTEFKKIASPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLDEAQQSKNFTFKCH
RDNNEIYSVNSLNFHPVHHTFATAGSDGSFNFWDKDSKQRLKAMLRCPLPIPCSAFNNDG
SIFAYSVCYDWSKGAENHNPATAKTYIYLHLPQESEVKGKPRAGGTTRR
NT seq 1050 nt   +upstreamnt  +downstreamnt
atgtctgcttttggtgctgccgcgactgctaatacaaaccctaataaatccatcgaggtt
tcgcatcctcccagtgactcagtttcgagtctctctttcagtcccaaagccaatttttta
gttgcaacttcttgggacaatcaggtacgatgttgggaaattacaaggaatgggaccaat
gtaggaagtgttgccaaggcttcgatatcccatgaccaaccagtgttgtgctcaacttgg
aaggatgatggaacgactgtcttttctggagggtgtgacaagcaagttaagatgtggcct
ttgctctctggtggtcaaccagtaactgttgcgatgcatgacgcccctatcaaagagatt
gcatggattccggagatgaactgcttagccacaggaagttgggacaaaaccttgaagtac
tgggatttaaggcaggcaaatccagtgcacactcagcaacttggtgagcgctgttatgca
atgacggtgcggtatcctttgatggttgttggcaccgcagacagaaacatgatagtttat
aacctgcaaagtcctcagactgagttcaagaaaatcgcttcacccttgaaatatcagaca
agatgtgttgcagcctttcctgatcaacaaggcttcttggtcggttcaattgagggaagg
gttggtgtacatcatctggatgaagctcaacaaagcaaaaacttcaccttcaaatgccac
agagataacaatgagatatactcagtcaactccttgaactttcacccagtgcatcacact
tttgcaactgctggatctgatggttcttttaatttttgggacaaagatagcaagcagaga
ctcaaggccatgttaagatgccctcttccaataccctgcagtgcattcaataacgacggc
tcgatttttgcatactcggtgtgttatgattggagcaagggtgctgaaaatcacaaccca
gcgacagctaagacctacatctatctgcatttaccacaggaatctgaagtcaaaggaaag
ccaagggctggaggaacgactagaaggtga

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