Populus nigra (Lombardy poplar): 133700988
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Entry
133700988 CDS
T10372
Name
(RefSeq) protein RAE1
KO
K14298
mRNA export factor
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133700988
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133700988
03036 Chromosome and associated proteins [BR:
pnz03036
]
133700988
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
133700988
Chromosome and associated proteins [BR:
pnz03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
133700988
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40_Prp19
WD40
WD40_WDHD1_1st
Beta-prop_WDR3_1st
Beta-prop_WDR5
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
Beta-prop_WDR3_2nd
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
EIF3I
ANAPC4_WD40
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_Aladin
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Beta-prop_EIPR1
WD40_RFWD3
Motif
Other DBs
NCBI-GeneID:
133700988
NCBI-ProteinID:
XP_061980719
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Position
8:complement(18866387..18872785)
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AA seq
349 aa
AA seq
DB search
MSAFGAAATANTNPNKSIEVSHPPSDSVSSLSFSPKANFLVATSWDNQVRCWEITRNGTN
VGSVAKASISHDQPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEI
AWIPEMNCLATGSWDKTLKYWDLRQANPVHTQQLGERCYAMTVRYPLMVVGTADRNMIVY
NLQSPQTEFKKIASPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLDEAQQSKNFTFKCH
RDNNEIYSVNSLNFHPVHHTFATAGSDGSFNFWDKDSKQRLKAMLRCPLPIPCSAFNNDG
SIFAYSVCYDWSKGAENHNPATAKTYIYLHLPQESEVKGKPRAGGTTRR
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcttttggtgctgccgcgactgctaatacaaaccctaataaatccatcgaggtt
tcgcatcctcccagtgactcagtttcgagtctctctttcagtcccaaagccaatttttta
gttgcaacttcttgggacaatcaggtacgatgttgggaaattacaaggaatgggaccaat
gtaggaagtgttgccaaggcttcgatatcccatgaccaaccagtgttgtgctcaacttgg
aaggatgatggaacgactgtcttttctggagggtgtgacaagcaagttaagatgtggcct
ttgctctctggtggtcaaccagtaactgttgcgatgcatgacgcccctatcaaagagatt
gcatggattccggagatgaactgcttagccacaggaagttgggacaaaaccttgaagtac
tgggatttaaggcaggcaaatccagtgcacactcagcaacttggtgagcgctgttatgca
atgacggtgcggtatcctttgatggttgttggcaccgcagacagaaacatgatagtttat
aacctgcaaagtcctcagactgagttcaagaaaatcgcttcacccttgaaatatcagaca
agatgtgttgcagcctttcctgatcaacaaggcttcttggtcggttcaattgagggaagg
gttggtgtacatcatctggatgaagctcaacaaagcaaaaacttcaccttcaaatgccac
agagataacaatgagatatactcagtcaactccttgaactttcacccagtgcatcacact
tttgcaactgctggatctgatggttcttttaatttttgggacaaagatagcaagcagaga
ctcaaggccatgttaagatgccctcttccaataccctgcagtgcattcaataacgacggc
tcgatttttgcatactcggtgtgttatgattggagcaagggtgctgaaaatcacaaccca
gcgacagctaagacctacatctatctgcatttaccacaggaatctgaagtcaaaggaaag
ccaagggctggaggaacgactagaaggtga
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integrated database retrieval system