KEGG   Populus nigra (Lombardy poplar): 133701091
Entry
133701091         CDS       T10372                                 
Name
(RefSeq) sm-like protein LSM2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
pnz  Populus nigra (Lombardy poplar)
Pathway
pnz03018  RNA degradation
pnz03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pnz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    133701091
  09123 Folding, sorting and degradation
   03018 RNA degradation
    133701091
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pnz03019]
    133701091
   03041 Spliceosome [BR:pnz03041]
    133701091
Messenger RNA biogenesis [BR:pnz03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     133701091
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     133701091
Spliceosome [BR:pnz03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    133701091
 Complex C
  U2 snRNP components
    133701091
SSDB
Motif
Pfam: LSM SM-ATX LSM14 DUF150_C DUF1256
Other DBs
NCBI-GeneID: 133701091
NCBI-ProteinID: XP_061980870
LinkDB
Position
8:complement(1464902..1467170)
AA seq 93 aa
MLFFSYFKDLVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVQLPPEGVDVDLLHDATRREARGG
NT seq 282 nt   +upstreamnt  +downstreamnt
atgttgtttttttcgtatttcaaggatttggtagggaaagaagtgacggtggagctgaag
aatgatttggctataagagggactcttcactctgtggatcagtacctcaacatcaagctc
gaaaacactcgcgttgtcgatcaagacaagtatcctcacatgctttctgtcaggaactgt
ttcataaggggatcagtagtgagatatgttcaacttcctccagagggtgtggatgttgat
ctgcttcacgatgccacgagaagggaagctcggggtggctga

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