Populus nigra (Lombardy poplar): 133701576
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Entry
133701576 CDS
T10372
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133701576
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pnz03041
]
133701576
Spliceosome [BR:
pnz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
133701576
Complex C
U5 SnRNP specific factors
133701576
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
133701576
NCBI-ProteinID:
XP_061981514
LinkDB
All DBs
Position
8:3615793..3627455
Genome browser
AA seq
2357 aa
AA seq
DB search
MWNDTGEQHIAPPGTAGPSIPPPPPSQPSYTVLAPSQTVSNPADAEAKLEEKARKWQQLN
TKRYSDKRKFGFVETQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFIPHAVYK
LLENMPMPWEQVRDVKVLYHITGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRHF
KRMRFPPFDDEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVYTWFYDHKPLVKTKLING
PSYRKWHLSLPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGGPKFEPL
YRDMEKGDEDWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVKLCVYHTPMIMYIKA
EDPDLPAFYYDPLIHPITSSNKERREKRTHDDDDDDEDFVLPEGVEPFLEDTQLYTDTTA
AGISLLFANRPFNMRSGRMRRAEDIPLVSEWYKEHCPPSYPVKVRVSYQKLLKCFVLNEL
HHRPPKAQKKKHLFRSLAATKFFQTTELDWAEAGLQVCKQGYNMLNLLIHRKNLNYLHLD
YNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQLADGLQ
YTFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLF
FLRGIVPLLERWLGNLLARQFEGRHSKGTAKTVTKQRVESHFDLELRAAVMHDVLDAMPE
GIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRE
RIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLES
RKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALS
RIKRHLLTQRAFKEVGIEFMDLYSSLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNW
IKPADSEPPPLLVYKWCQGINNLQGIWDTSEGQCVVMLQTKFEKFFEKIDLTMLNRLLRL
VLDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRAS
EIAGPPQMPNEFITYWDTKVETRHPIRLYSRYIDRVHILFRFTHEEARDLIQRYLTEHPD
PNNENMVGYQNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYS
KDNPNLLFSMCGFEVRILPKIRMTQEAFSNTRDGVWNLQNEQTKERTAVAFLRVDDEHMK
VFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTR
IKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMS
HEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPR
INTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQAL
GGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWW
SPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVLD
QELDALEIETVQKETIHPRKSYKMNSSCADVLLFAAHRWPMSKPSLVAESKDVFDQKASN
KYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLHSAFGNW
FPGSKPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIW
FVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAK
WKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQSCLK
IEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDK
TIVTEPHHIWPSLTDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITP
PSQQRQQIAEIEKQAKEASQLTAVTTRTTNVHGDELIVTTTSPYEQAAFGSKTDWRVRAI
SATNLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQISGYLYGISPPDNPQ
VKEIRCIAMPPQWGTHQQVHLPSALPEHDFLNDLEPLGWMHTQPNELPQLSPQDLTAHAR
VLENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEK
VQMLLSDRFLGFYMIPDNGPWNYNFMGVKHTVSMKYGIKLGTPREYYHEDHRPTHFLEFS
NLEEGETAEGDREDTFT
NT seq
7074 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacgacaccggagagcagcatatagcgcctccggggacggctgggccgtcgatc
ccaccgcctccaccgtcgcagccttcttacaccgtactggcgccgtcgcaaacggtgtcg
aatccagcggatgcggaggcgaagctggaggagaaggccaggaaatggcagcaacttaac
acgaagaggtacagtgataagcggaagtttggtttcgtcgagacgcaaaaggaggatatg
ccgccggaacacgtgaggaagattataagggaccatggtgatatgtcctcgaagaaatat
cgccatgataaacgtgtgtatcttggagcccttaaattcattccacatgcagtatacaag
cttcttgagaatatgccaatgccctgggagcaggttcgtgatgtgaaggttctataccat
attacaggagcgatcacttttgtgaatgaaattccatgggttgttgaacctatttactta
gctcagtgggggacaatgtggatcatgatgcgaagagaaaagagggatcggcggcatttc
aagagaatgaggtttccgccttttgatgatgaggaacctcctttagactatgctgataat
ttgttagatgttgatcctctagagcctattcaattagagttggatgaagaagaagattct
gctgtctatacttggttttatgaccataagcctcttgttaaaacgaagcttatcaatggt
cctagttacaggaagtggcatctctctcttccaataatggcgactcttcaccgtctggca
ggacagcttctttctgatctaattgaccgcaactatttttacttgttcgacatggagtcg
ttctttacagccaaagcattgaacatgtgcatacctggtgggcctaagtttgaacctttg
tatcgtgacatggagaaaggtgatgaggactggaacgaattcaatgacatcaacaaactc
attattcggtcacctttgcggacagagtatagaattgcatttcctcatctttacaataat
aggccccggaaagtaaaactttgtgtgtatcacactcccatgatcatgtacattaaagcc
gaggatcctgatttacctgctttctattatgatcctttgatacacccaataacctcctct
aacaaggaacgccgtgaaaaaaggactcatgatgacgatgacgatgatgaggactttgtt
ttgccagaaggggtggaaccttttttggaggatacacagctttataccgacaccacagct
gctggcatttccttgttatttgccaaccgaccttttaacatgagatctggacggatgcga
cgggcagaagatataccccttgtgtcggagtggtataaggagcactgtcctccatcatat
cctgtcaaagttcgagtaagctatcagaaattgttgaaatgttttgttttgaatgaactg
catcatagaccgccaaaagctcagaagaagaagcacttgttccggtcattagcagcaact
aaattcttccaaaccacagagctagattgggctgaagcaggtctccaagtttgtaagcag
gggtacaacatgctgaatctattgatacaccggaaaaatttaaattacctccaccttgat
tataattttaacttgaagcctgtgaagacccttacgacaaaggaacgcaagaagtcacga
tttgggaatgcttttcatctttgtcgtgagatcttgcgtttgacaaagcttgtggttgat
gccaatatacaattcaggttaggtaatgttgacgctttccaattggccgatggtcttcag
tatacattttcccatgttggtcagttgacaggaatgtacagatacaagtataggctgatg
cgccagataagaatgtgcaaagatcttaagcatttgatatattaccgcttcaatactggc
ccagtgggtaagggacctggttgtggattttgggcaccaatgtggagggtatggctattt
ttcctacgtggcatagtgcctcttcttgaacggtggttgggtaatcttcttgcaagacag
tttgaagggcgccattcaaaaggaactgccaagactgttacaaagcagcgcgtcgagagc
cactttgacttggaactccgtgctgctgttatgcatgatgttcttgatgccatgccagag
ggcattaagcaaaataaggctagaacgatactgcagcaccttagtgaggcttggcgctgc
tggaaagcaaacattccatggaaggttcctggtttaccagttcccattgaaaacatgata
cttcggtatgttaagtcaaaagcagattggtggacgaatgttgctcactataatcgtgag
cgtatcagaaggggtgcgactgttgacaagacagtgtgcagaaagaatcttggaagactg
actcggttgtggttaaaggcagaacaggaacgtcaacacaactatttgaaggatggccca
tatgtcactccagaagaagctgttgcgatttacacaactactgtccattggttggagtcc
agaaagttttcaccaattccattccctcccttgtcatacaagcatgacactaagctgctt
atccttgctttggaaaggttgaaagagtcatacagtgtggctgtgagattaaaccagcta
cagagggaagaactaggtcttattgaacaagcttatgataacccccatgaggctttatca
cggatcaagcgtcacctgctcactcagcgtgctttcaaagaagtgggcatagagttcatg
gatttgtacagttccctgattccggtgtatgaaattgagcctcttgaaaaaataacagat
gcttatttggatcaatatctgtggtatgaaggtgataagcgccacctctttccaaactgg
attaaacctgcagattctgagccaccaccactgcttgtctataaatggtgtcaaggcata
aacaatttgcaaggtatctgggacacaagtgaggggcagtgtgtggtgatgcttcagacc
aagtttgagaagttctttgaaaagatcgacttgacaatgttaaataggcttcttcggttg
gtccttgaccacaatattgctgattatgtgactgccaaaaacaatgttgtcctttcctac
aaggacatgagtcacacgaactcgtatggtttgatacgtggccttcagtttgcttctttt
gtggtgcagtattatggacttgtgctggatctcctgcttcttggattgacccgggccagt
gagatcgctggtccgccacaaatgccaaatgaatttatcacctactgggatacaaaggtc
gagacacgacatccaattcgtctttattccaggtacatagacagggtgcatatattgttt
cggtttactcatgaagaagcccgagatctaatacaacgatatctcactgagcatcctgat
cccaacaatgaaaatatggttgggtatcagaacaagaaatgctggcctagagatgcaagg
atgaggctaatgaaacatgatgtcaatcttgggaggagtgttttctgggacatgaagaat
cgtctccctcgaagcatcacaactttagagtgggagaacagttttgtttctgtttacagc
aaggacaacccaaacctgcttttcagcatgtgtgggtttgaagttcggatacttcctaaa
ataagaatgactcaagaagcattcagcaatacaagagatggtgtttggaatttgcagaat
gagcagaccaaggaacggaccgcagttgcttttctacgggttgatgatgagcacatgaaa
gtgtttgagaatcgtgtgaggcagattctgatgtcctcagggtcaactactttcacaaag
attgttaacaaatggaatacagccttgattggattgatgacatatttccgtgaagcaact
gtgcatactcaagagctattagatttgcttgtaaaatgtgaaaataaaattcaaacccgt
atcaagattgggctaaactcaaaaatgccaagcagatttcctcctgttatcttctataca
ccaaaagaaattggaggacttggcatgttatccatgggtcacatattgatccctcaaagt
gatcttcgatatagtcagcaaacagatgttggtgtaacccatttcaggagcggaatgagt
catgaggaggaccagctgattccaaatctttatcggtacattcagccatgggagagtgag
ttcatagactcacagcgggtttgggcagagtatgcattgaagaggcaggaagcgcaggcg
caaaataggcgtctaacacttgaagatttggaagattcatgggacaggggaattccacgc
attaatactctttttcagaaagatcgtcacactttagcatatgacaaagggtggagagtg
cgcacagacttcaagcaataccaagttttaaaacaaaatcctttctggtggacgcaccag
agacatgatggaaaattgtggaacttgaacaattatcgaactgatgtcattcaagctctt
ggtggtgttgaaggaattcttgagcataccttgttcaaaggaacatatttcccaacttgg
gaaggtctcttttgggaaaaggcatctggctttgaggagtccatgaagtataagaagctt
actaatgcacagagatctggtctgaaccaaattcctaaccgtagatttacactttggtgg
tcccccacaataaacagggcaaatgtttatgtgggttttcaagtgcagttagatctaacc
ggcatcttcatgcacgggaagatcccgaccttgaagatttcgctgattcagatattccgt
gctcacctgtggcagaagattcatgagagtgttgttatggacctctgtcaggtcttggat
caggaactggatgctttggaaattgagactgtgcagaaagaaacaatccatccaaggaaa
agttataaaatgaacagctcctgtgcagacgttctcctttttgctgctcatagatggccc
atgtcaaagcctagtcttgtggctgagtcaaaagatgtgtttgaccagaaagcaagcaat
aaatactggatagatgtacagctgagatggggagactatgattctcatgatattgagcgc
tatactagggccaaatttatggattacacaacagacaacatgtctatatatccatctcca
actggggttatgattgggcttgatctagcgtacaatttgcactctgcatttggcaactgg
tttccagggtctaaaccgctgctagctcaagctatgaacaaaataatgaagtcaaaccca
gctttgtatgtcttgagggagcgcataagaaaaggtttgcagttgtattcttcagagcct
acagaaccatatttatcatcacagaattatggggagatctttagcaatcagataatatgg
tttgttgatgatactaatgtctaccgtgtcacaatccacaagacatttgaagggaatctc
acaacaaaacccataaatggtgcaatcttcatattcaatccgagaactgggcagctattt
ttgaaggttatccacactagtgtatgggcaggacagaaacgtctgggccagcttgccaag
tggaaaactgctgaagaagttgcagctcttgtgcggtctctgcctgtggaagaacaacca
aaacaaattattgtgactcgcaaagggatgcttgatccattggaggttcacttgcttgat
ttccccaacatagttatcaagggaagtgagttgcagctcccattccagtcatgcttaaag
atagagaaatttggtgatttgattttgaaggcaacggaaccacaaatggttttgttcaat
atttatgatgattggctgaagagtatatcatcttacactgcgttctctcggctcattctg
attctccgtgcacttcatgttaataatgagaaggcaaagatgctactcaagcctgacaag
actatcgttactgagccacaccacatctggccttcacttactgatgatcagtggatgaaa
gttgaggttgctttaagggatctcatactctctgactatgccaagaagaacaatgtgaac
acctcagcactgacacaatctgagatacgtgatattattcttggagctgagatcactcct
ccttctcaacaaaggcagcagatagcagagattgagaaacaggccaaagaagcgagtcaa
ctgacagcggtcaccacaaggaccacaaatgtgcatggtgatgaactcattgtcacaacc
actagtccatatgagcaagctgcgtttggttctaaaacagattggcgtgtcagagctata
tctgctacaaatctctatcttcgagtcaatcatatctatgtgaattctgaggatatcaag
gaaactggatacacatatatcatgccgaagaatatcttgaagaagtttatctgtatagct
gatctgcgaactcaaatttctgggtatttgtatggtataagccccccggacaatcctcag
gtcaaggaaatccgttgtattgctatgcccccacagtgggggactcatcaacaggttcat
cttccatcagctcttcctgagcatgatttcctcaatgatctggagcctttgggatggatg
cacacacaaccaaatgagcttcctcagttatcaccacaggatctcacggctcatgctcgg
gttttggagaacaacaagcaatgggatggagaaaagtgcatcatcctgacatgtagtttc
actccaggatcatgctcgttaactgcatataagctgactcctagtggttatgagtgggga
cgtgtcaacaaggacacgggaagcaatcctcatggctacctgccaactcattacgagaag
gttcagatgctcctgagcgaccgcttccttggtttctacatgattcctgataatgggcca
tggaattacaattttatgggagtgaagcatacagtgagcatgaaatatggaatcaagctg
gggacaccccgagagtattaccatgaggaccataggccaacacatttcctggagttcagc
aacctggaggagggtgagaccgctgaaggcgatcgagaggatacattcacttga
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integrated database retrieval system
