KEGG   Populus nigra (Lombardy poplar): 133701592
Entry
133701592         CDS       T10372                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 1-like
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
pnz  Populus nigra (Lombardy poplar)
Pathway
pnz03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pnz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    133701592
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pnz03021]
    133701592
Enzymes [BR:pnz01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     133701592
Transcription machinery [BR:pnz03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     133701592
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_1 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5
Other DBs
NCBI-GeneID: 133701592
NCBI-ProteinID: XP_061981541
LinkDB
Position
8:complement(20049612..20065421)
AA seq 1916 aa
MDENSQSSIFDGEITGIRFGLATQKEICTASISDCPISHSSQLTNPFLGLPLEFGKCESC
GTSEPGKCEGHFGFIHLPIPIYHPSHISELKRMLSLICLKCLKLKRNKIQIKSNGVAERL
LSCCEECAQISIREVKNTDGACFLELKLPSRSRLRDGFWNFLERYGFRYGDDFTRPLLPC
EVMQILKRIPAETRKKLSGKGYFPQDGYILQQLPVPPNCLSVPVVSDGITVMSSDLSISM
LKKVLKQAEVIRSSRSGAPNFDAHKDEATSLQSMVDQYLQVRGTTKTSRDVDTRYGVKKE
SSESTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYTLVNQVGIPYEIAQRITFEERVSVH
NMRYLQELVDNKLCLTYKDGSSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTT
HKHSLQALSVYVHDDHAVKINPLICGPLSADFDGDCVHLFYPQSLAAKAEVLELFSVEKQ
LLSSHSGNLNLQLTTDSLLSLKMMFKACFLGKSAAQQLAMFISPYLPQPALLKVNCFFPH
WTAHQILQMALPACFNCSGERFLIINSNFLKVDFNRDVVASVINEILISMFFEKGSGAVL
KFFNSLQPMLMENLFSEGFSVSLEDFSISRAVKQRIPESFKAISPLLCNLRSTFNELVEL
QVENHIREMKQPVREFILTSSALGYLIDSKSDAAVTKVVQQIGFLGLQVSDRGKLYSKTL
VEDLATHFLSKYPANLFDYPSAQYGLIQNSFFHGLDAYEEMAHSISTREVIVRSSRGLSE
PGTLFKNLMAILRDVVICYDGTVRNVSSNSIIQFEYGVKVGTESQSLFPAGEPVGVLAAT
AMSNPAYKAVLDSTPSSNCSWDMMKEILLCKVGFKNDLADRRVILYLNDCGCGRNYCQER
AAYLVKNHLEKVSLKDIAKCFMIEYKSQQIPESFGSDAGLVGHVHLDKRKLQDLNITAQV
ILEKCQETVNTFRKKKKVGNLFKKTILLVSESCSFQQCIDESPCLMFFWQGADDVHLERT
SNILADMICPVLLETIIKGDHRISCANIIWATPETTTWIRNPSRTQKGELALDIVLEKSV
VKKSGDAWRIVLDSCLPVLHLINTTRSIPYAIKQVQELLGVSCAFDTAVQRLSKSVTMVA
KGVLKEHLILLGNSMTCAGSLIGFYTGGYKTLSRSLDIQVPFTEATLFTPRKCFEKAAEK
CHTDSLSSIVASCAWGKHVTVGTGSHFDVLWDTKEACLNPEGSMDVYSFLNMVRSTAGGE
ESVTACLGAEVDDLMLEDEDWNLSPEHNSSSDKPTFEDSAEFQDFLGNQPAESNWEKISS
LKDRSRSSGNWDVDKNDGAVKEKPWSLGMNTAEANDVASSGWDTAAARTTNNSWNSENNV
AQSNSFSGWATKKPEPHNGFATKVQEEPTTSNDWDAGAAWGRKDRDNKFAETNASKSWWG
KVTDGDESGQNKSKNKRPEDQDVGTHGWDDKMSQDQSISGWASKTTQEATTESLGWDSKG
NSNPGDAACGWKAASTWGAENTDGDKLWGKEVSSNQADTASGWGKPKSPEISLGWGSPKE
SVKSDRGWGMSSSGGGRDKKTENQSLAGQGKESGGWGNKVTSNQADTASGWGKPKSSENS
QGWGLSKESGKEVHGWGVPNSAGGNGSETNNNNENQSLVEQGKESGWDNKASSNQEGTAS
GWGKPKSPALSEGWGSPREPVKAVHGWGVPNSGGGNGGGRDQQWGQQSREFKKDRFEGSR
GWGSNNGDWKNKRNRPSKPHEDLNASGIFTTTRQRLDVFTSQEQDILSDIEPLMLSIRRI
MHQTGYNDGDPLSADDQSYVLDNVFHYHPDKAVKMGAGIDHVTVSRHSNFQESRCFYIVS
TDGCKQDFSYRKCLENFIKGKYPDLADEFIAKYFARRGNRQRTPAPEGTEEEKQAL
NT seq 5751 nt   +upstreamnt  +downstreamnt
atggatgaaaattctcaatcaagcatttttgatggggagataactggaatcagatttggt
ttggcaactcagaaggaaatttgtacagcatccatcagtgattgccctatcagccattcc
agtcagctgactaatcccttccttggtttgccacttgaatttggcaaatgtgaatcttgt
ggcacttctgaaccaggaaaatgtgaaggtcattttggattcatccacttgccaattcct
atatatcatcctagccatattagtgagttgaagcgaatgctgagcttgatatgtttgaag
tgcttaaagttaaaaaggaacaagattcaaatcaagagtaatggtgtggctgaacggttg
ctttcatgctgtgaggagtgtgcacaaatttctattagagaggttaagaatacagatggc
gcttgtttcttagaactaaagctgccttctaggtccagactaagggatggtttctggaat
ttcctagaaagatatggttttcgctatggtgatgactttacacgaccattgctcccctgt
gaggtcatgcaaattctgaagagaattcctgcggagactagaaaaaagctaagtggaaaa
ggatatttcccccaggatggttatatcctacaacagttacctgtccctccgaactgtcta
tcagttccagttgtttcagatggaattactgtcatgtcttcagatctctctatatccatg
cttaagaaagttcttaagcaagctgaagtgatcagaagctcacggtcaggtgcaccaaat
tttgatgcacacaaagatgaagctacttccttgcaatcaatggtcgatcagtatcttcaa
gttaggggcacaacgaagacatcccgtgatgtagatactcgttatggggtaaaaaaggaa
tccagcgaatccacaaccaaagcatggcttgaaaagatgaggactctgtttataagaaaa
ggctctggattctcttctcgcagtgtcataactggagatgcgtacacactagtgaaccaa
gttgggatcccctatgagattgctcaaagaattacattcgaggagagggtcagtgtgcat
aacatgagatatctacaagagcttgtggataacaaattgtgcctgacatacaaggatggt
tcttccacctactctctaagggaaggttccaagggtcatacttttcttcgacctgggcaa
gttgttcataggcggattatggatggagacattgtctttattaatagaccaccgacaact
cacaaacattcattgcaagcactttcagtgtatgttcatgatgatcatgcagttaagatt
aatcctctgatatgtgggcctttaagtgctgattttgatggtgattgtgttcacctattc
tatcctcagtcccttgctgcgaaagctgaagtcttggagcttttctcagtggagaaacaa
ttgcttagctcccatagtggcaatctgaatttacagctgacaacagattcacttttgtca
ttgaagatgatgttcaaggcctgctttttgggcaaatcagctgctcagcaactagcaatg
tttatatcaccttatttgccacaaccagctttgttgaaggtcaactgttttttcccacac
tggactgcacatcagattctccagatggctttaccagcatgcttcaactgctctggagag
agattcttgatcatcaacagtaattttttgaaggttgatttcaacagggatgttgtggca
tcagtaattaatgaaattctgatctcaatgttctttgagaagggttctggtgcagtgctc
aagttctttaactccttgcagcccatgctgatggaaaatttgttctctgaaggcttcagt
gttagtttggaagatttctccatctctcgggcagtcaaacaaaggatcccagaaagtttc
aaggccatttctcccttgctttgtaatttaagatccaccttcaatgagctggttgagttg
caagtggagaatcacatccgggagatgaaacagccagttagagaattcattttaacttcc
tctgccttgggttatttgattgactctaagagcgatgcagctgttactaaggttgttcag
caaattggcttcttgggcttgcaagtttctgataggggaaaactttactcgaaaactctt
gttgaagatttggccacccattttctgagcaaatatcctgccaatttgtttgattatcct
tctgcccagtatggcttgattcaaaacagtttttttcatgggttggatgcatatgaggag
atggctcattccatttctacgagagaagtcattgtgcgctcatctagaggattgtctgag
ccaggaacattgttcaaaaacctaatggccatcctccgggatgtggtaatttgctatgat
ggcactgtaagaaatgtcagcagcaactcaatcatccaattcgagtatggtgtgaaggtg
ggaactgagtcccaaagtttattcccagctggtgaacctgttggcgtcttagctgccact
gcaatgtccaatcctgcatataaggctgttcttgattctactccaagtagcaattgctct
tgggatatgatgaaggaaatacttctttgcaaagttggtttcaagaatgacctagctgat
cgacgtgtgattttatacctgaatgactgtggctgtggtagaaattattgccaagaaaga
gcagcatatttggtcaagaatcacttggaaaaagtcagtcttaaagatattgccaagtgt
tttatgattgaatacaagagtcaacagataccagaaagttttggaagtgatgcaggcctt
gttggtcatgttcatcttgataagaggaagttgcaagatttgaacattactgctcaggtg
attcttgagaagtgccaagagactgtcaacacatttcgaaagaagaaaaaagttggcaat
ctttttaagaagacaattttgttggtcagtgaaagttgctctttccagcaatgtatagat
gaatcaccatgcttgatgttcttctggcaaggtgccgatgatgttcatttggagaggact
tcaaacattcttgctgacatgatttgcccagttctgctggaaacaatcatcaaaggtgac
catcgaatttcctgtgcaaatataatttgggcaactccagagacaacaacttggataaga
aacccatccaggactcaaaagggggagttggctttggatattgttctggagaaatctgtt
gttaagaaaagtggtgatgcttggagaatagtcttggactcatgtcttccagttcttcat
ttaatcaacaccacacgttcaattccttatgcgattaaacaagttcaggaattgttggga
gtttcctgtgcatttgacacagcagttcagcgcctctcaaaatcagtgaccatggtggca
aagggtgttctgaaagagcatctcattttactcgggaacagtatgacatgtgctggaagc
ttgattggcttctacactggaggttataaaacattgtctcgatcattggatatccaagtg
ccatttactgaggccacactctttacaccgagaaaatgttttgaaaaggctgcagagaag
tgccacactgattctttatcaagtatagttgcttcttgtgcatggggcaagcatgttact
gttggaacaggttcacactttgatgtcctgtgggacacaaaagaggcatgcttgaatcca
gagggcagcatggatgtatacagttttctaaatatggtgagaagtactgcaggtggagaa
gagtcagttactgcttgtttaggtgctgaagttgatgatcttatgctggaagatgaagac
tggaacctgtcacctgagcataactctagttctgataagcctacctttgaagacagtgct
gaatttcaagactttttaggcaatcaacctgctgaatcgaactgggaaaagatttcatct
ttaaaggatcggtctagaagctctggaaattgggatgttgataaaaatgatggagctgtt
aaggaaaaaccttggagtttgggaatgaatacagccgaggcaaatgatgttgcttccagt
ggctgggacacagcagctgccaggacgacaaataactcctggaattcagagaataatgta
gctcagtccaattccttttctggttgggcaacaaaaaaacctgaaccccacaatggcttt
gcaacaaaagttcaagaagaacctaccacgtccaatgattgggatgctggtgctgcctgg
gggagaaaggacagagacaacaagtttgctgagacaaatgcatcaaagtcttggtggggg
aaggtaacagatggtgatgaatctggacaaaacaaaagcaaaaacaaacgtccagaagac
caagatgtagggacacatggttgggacgataagatgtctcaggaccagtcaatatctggt
tgggcttctaaaactacccaggaggctaccactgaatccctcggttgggatagcaagggc
aattcaaatccgggagatgcagcatgtggttggaaggcagcatccacttggggggcagaa
aatactgatggtgataaactttggggtaaagaggtgtcttctaatcaggcagacacagcc
tctggttgggggaaacctaagtcaccagaaatttcactaggctggggctcgcccaaagag
tcagttaagtcagatcgtggatgggggatgtcgagttctggaggtggcagggataaaaag
actgaaaaccaatctctggctggccaagggaaagagtcaggtggttggggtaacaaggtg
acttcgaatcaggcagacacggccagtggttgggggaaaccaaagtcatcagaaaattca
caaggctggggcttgtccaaagagtctggtaaggaagttcatggatggggggttccaaat
tctgcaggtggcaacggaagtgaaacaaataacaataatgaaaaccaatctctggtggag
caagggaaagagtcaggttgggataacaaggcatcttcaaatcaggaaggcacggcctct
ggttgggggaaaccaaagtcaccagcactttcagaaggctggggctcacccagagagcca
gttaaggcagttcatggatggggggtgccaaattctggaggtggcaatggaggtggaagg
gatcagcaatggggtcagcagagtagagagttcaagaaagaccgctttgaaggttctcga
ggttggggatcgaataatggagattggaaaaataagaggaaccgcccttctaaaccgcat
gaggatttaaatgccagtggaatatttaccacaaccaggcagcggttagatgtattcact
tctcaagagcaggatatcctctctgatattgagccattgatgctttctattagaaggata
atgcatcaaactgggtacaatgatggggatccattatctgccgatgatcagtcttatgtg
cttgataatgtctttcattatcatccagacaaagcagtgaagatgggtgctggaattgat
catgtcacggttagcaggcacagcaatttccaggagagcaggtgcttctacattgtctca
actgatggctgcaaacaagatttttcataccgcaaatgtctggagaattttatcaaggga
aaatatccagacttggctgatgaattcattgcaaagtattttgcaagaagaggcaatcgg
cagcgcaccccagctcccgagggaaccgaggaggagaaacaggccttgtga

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