Populus nigra (Lombardy poplar): 133701597
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Entry
133701597 CDS
T10372
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03013
Nucleocytoplasmic transport
pnz03015
mRNA surveillance pathway
Brite
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
133701597
mRNA cycle factors
P-body specific factors
133701597
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Gene cluster
GFIT
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NCBI-GeneID:
133701597
NCBI-ProteinID:
XP_061981551
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Position
8:390111..398148
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AA seq
511 aa
AA seq
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MKVGQSDKTKVVVRHLPPGVSQPMFVEQIDLAFSGRYNWLSFRPGKSSQKHQSCSRAYID
FKRPDDVIDFAEFFNGHLFVNEKGTQFKAIVEYAPSQHVPKQWSKKDGREGTILKDPEYL
EFLEFIAKPVENLPSAEIQLERREAERAGVAKDAPIVTPLMDFIRQKRAAKSGPRRILSN
GKPSRRAGGSGSPSSSSSKRGSEKKRASTTMYVLRDTVKGTSGKDKSIYAQVPKLDDRQL
SKAVTLGSGFGTEVSEEETAVSGITGTGKKKILLLKGKEKEISLQQSISPSDRNIISSTA
LKSQRHESSGRVIKSILLNKDSRRIQSSGVQSEPQMQTSNLENVKRPPRPPHALVLKDAN
GTPDDKVVGNDLHGFPNEKQERRTRNKDRPDRVVWTLRRSEGSYASDESLSSSASLSTQS
GFDSSQVNHGDVKADTLNLRSGEVKALGSGRSNHSSLDNGSHKHSGRRGPPHPVRDADGS
TVEGKTLKRGGASGYGSHEKQVWVQKSGSGS
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atgaaggttggtcagtctgacaagaccaaggtggtggtccgccacttgccaccgggggtt
tctcagccgatgttcgtcgagcaaatcgaccttgctttctctggccgctacaactggctc
tcctttcgtcctggcaagagcagccagaagcatcaatcctgttctagagcctatattgac
tttaaaaggcctgacgatgttattgactttgccgagttctttaatggccacctatttgtt
aatgagaaaggcactcagtttaaagctattgttgagtatgctccttcacagcatgtccca
aagcagtggtctaagaaagatggtcgtgaaggcaccatattgaaagatcctgagtatttg
gagttccttgaatttattgcaaagcctgtcgagaatcttccaagtgctgaaatacaattg
gagagaagagaagctgaaagagctggtgttgcaaaagatgctcccattgttaccccttta
atggactttattcgacagaaaagagctgctaagagtggacctcggaggattttgtccaat
gggaaaccgagcagaagggctggtggcagtggaagtccgagctcttcctcatcaaaacga
ggttctgagaagaagagagcttcaacaacaatgtatgttttaagggacactgtgaaaggc
acaagtggaaaagacaaatcaatttatgcgcaggttcccaagctagatgatcggcaacta
tctaaagctgtaactttaggttctggatttgggactgaagtatcagaagaggaaactgca
gtttctggaattactggtaccgggaagaagaaaatcctgcttctgaaagggaaagagaag
gaaatttcactgcaacagagcatatcaccatctgatagaaatatcattagttcgaccgct
ttaaagagccagcggcatgaatcctctggaagggtaatcaaaagcatactcttaaacaag
gattcgcgtcgaattcaatcctctggagtccagtctgagccacagatgcaaacctcaaat
ctagaaaatgtcaaacgtcctcctcggcccccacatgcattggttttgaaggatgcaaat
ggaacaccagatgacaaggttgttgggaatgatttgcatggttttccaaatgagaagcag
gaaaggcgaaccagaaataaagatagacctgatcgtgtagtgtggactctccgcagatca
gagggatcctatgcaagtgatgaatccttgtcatcatctgcatctctatctacacagtca
gggtttgattcttcacaagtaaaccatggagatgttaaagcagacaccttaaatttaagg
agcggagaagtaaaagcactcggaagtgggcgtagtaatcattcttctttagataatgga
tcacataaacattctggtcgtcggggaccaccacatcctgtgagggatgctgatggctcc
actgttgaggggaagactcttaaaagaggtggtgcttctggttatgggtcccatgagaag
caagtctgggttcagaagtccggttcgggttcttag
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