Populus nigra (Lombardy poplar): 133701629
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Entry
133701629 CDS
T10372
Name
(RefSeq) probable pectate lyase 8
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz00040
Pentose and glucuronate interconversions
pnz01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
133701629
Enzymes [BR:
pnz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
133701629
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
PDGLE
Motif
Other DBs
NCBI-GeneID:
133701629
NCBI-ProteinID:
XP_061981603
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All DBs
Position
8:complement(18563068..18568028)
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AA seq
452 aa
AA seq
DB search
MTMAVPQKWVCVFSAVIVLLFVGVVATSRPDVVGISALTRNVEAEKEQSSSNSTMAARSQ
EEADAFNEKAVAADPEEVVSMVEMNIRNSTERRRLGYFSCGTGNPIDDCWRCDPNWHKNR
KRLADCGIGFGRNAIGGRDGRFYVVTDSSDHDPVNPRPGTLRHAVIQDAPLWIVFKRDMV
IQLKQELIMNSFKTIDGRGVNVHIANGGCITIQFVTNVIIHGLHIHDCKPTGNAMVRSSP
SHYGWRTMADGDAISIFGSSHIWVDHNSLSNCADGLVDAVMGSTAITVSNNHFTHHNEVM
LLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEP
TINSQGNRYNAPANPFAKEVTKRVDTAPGKWKSWNWRSEGDLLANGAYFTPSGAGASASY
ARASSLGAKSSSMVGAMTANSGVLGCRRGHQC
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgacaatggcggtgcctcagaaatgggtttgtgtgttttctgctgtgattgtattgttg
ttcgttggtgtcgtggctacttcaagacccgatgttgttgggatctctgctcttaccagg
aatgtagaagcagagaaggaacagagctcaagcaactcaacaatggcggccaggtctcaa
gaagaggctgatgcatttaatgagaaagcagttgctgctgatcctgaagaggtggtttca
atggtagagatgaacatccgcaacagtactgaaaggaggaggttaggctacttctcttgt
ggaacaggcaatcctattgatgattgctggcgttgtgaccccaactggcacaagaaccgc
aagcgccttgctgactgtggcattggttttggcagaaatgccatcggtggccgtgatggt
cgcttctatgttgttactgattctagtgaccatgaccctgtgaacccaaggcctggaact
ttgcgccatgccgtgatccaggacgctcctctatggatcgtgttcaaaagggacatggtg
attcaattgaagcaggaacttatcatgaacagctttaagaccatagatggccgtggggtc
aatgttcacattgctaatggtgggtgcatcactatccaatttgttaccaatgtgatcatt
catggtctacacatccatgactgcaaacccactggcaatgctatggtgcgtagctcacca
tctcattacggatggaggacaatggctgatggtgatgccatctctatttttggatcaagt
cacatttgggtggatcacaattccctttctaactgtgctgacggcctggttgatgctgtt
atgggttcgactgccatcaccgtctccaacaatcacttcacccaccataatgaggtaatg
ctcctgggccacagtgactcttataccagagacaagcaaatgcaagtgaccattgcgtac
aaccattttggagagggactgatccagagaatgccaaggtgtagacatgggtacttccat
gtggtaaacaatgactacactcactgggaaatgtatgccatcggtggcagtgcagaaccc
accatcaacagccagggcaacagatataatgctccagccaacccttttgcaaaggaggtg
acaaagagggtggatacagctccaggcaaatggaaaagctggaattggaggtcagaagga
gacctgttggcgaatggagcttacttcactccatccggggctggagcttcagctagctat
gctcgcgcttcaagcttgggtgccaagtcttcttccatggtcggagcaatgactgctaat
tccggtgttcttggctgccgcaggggccatcagtgctag
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