Populus nigra (Lombardy poplar): 133701787
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Entry
133701787 CDS
T10372
Name
(RefSeq) E3 ubiquitin protein ligase RIN2-like
KO
K10636
E3 ubiquitin-protein ligase AMFR [EC:
2.3.2.36
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
133701787
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pnz04121
]
133701787
Enzymes [BR:
pnz01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.36 RING-type E3 ubiquitin transferase (cysteine targeting)
133701787
Ubiquitin system [BR:
pnz04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
133701787
Multi subunit type E3
ERAD complex
133701787
LMBR1L-GP78-UBAC2 complex
133701787
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
zf-C3HC4
CUE
zf-rbx1
zf-RING_UBOX
zf-ANAPC11
zf-RING_11
zf-C3HC4_2
zf-RING_16
zf-RING_5
zf-C3HC4_3
U-box_ZFPL1
zf-RING_Vps41
zf-C3HC4_4
PHD
FAR1_N
zf_RING_Vps8_fungal
zf-HC5HC2H
RINGv
Motif
Other DBs
NCBI-GeneID:
133701787
NCBI-ProteinID:
XP_061981859
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All DBs
Position
8:13400411..13408016
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AA seq
584 aa
AA seq
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MGASYLAISAVCTVLSFSVLTEVSLDILRSDGLIVENLTNFDNANHALELLFGSYATIAL
VVNFVFNVFILLNLCLKTIFFGELYPSETQKLVERLINYAIYKGTLLPLVIPPTISQIGL
WSIWLTVLCSLKMFQALARDRLERLNASPSATPWTYFRAYSVLLLVLSVDFFWIHMCYVI
YRSTGSSMFLLLFFEPFSIAFETMQAMLVHGFQLLEIWLHHSTGNSANCQRFKFFDAIRA
GSLLEWKGILIRDLGFSLEMAALIMALGHYVHIWWLHGVALHLVDVVLFFNIRALLSAII
KRIKGFIKLRMALDALHAALSDATSEELRAYDDECAICREPMAKAKRLLCSHLFHLACLR
SWLDQGLNEIYSCPTCRKPLFVGRPENEANTHTGEVLADEQLAHQIHEGFDRQNTPGHAL
LDGAFPTQIQNSTESSPWRSAGLDSSWLPTLSGQGADGAGPSTAMRSVGLGGVQMMMRHL
ASVGETYAQTALEDAAWSLWPMSPSQATPSASSTPPAAGGRHPGGTGGLHMRTASHSTND
FIANILAMAETVREVLPHVPDELILQDLQRTNSATVTVNNLLHM
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgggtgccagttatttagcgatttcagcagtgtgtacggttttgagtttttcggttcta
acagaagtgtcgttagatatattgagatcagatggtttgattgttgagaatcttaccaac
tttgacaatgccaaccatgcacttgagcttctgtttggttcatatgccaccattgcattg
gtggtgaattttgtattcaatgtatttatactactcaatctttgtcttaagactattttc
tttggagagttgtatccttctgaaactcaaaaactagtggaacgtctcattaattatgct
atttacaagggaacacttttaccactggttattccaccaacaatttctcaaataggtctc
tggtcaatttggctgactgtactatgttctttaaagatgtttcaagcattagctagagat
cgacttgaacgtttgaatgcatctccttctgcaacgccatggacatattttcgtgcttat
tcagtgttgttgctggtcctctctgttgactttttctggatacatatgtgttatgtaata
tacagaagcacaggttcatccatgtttctgttgttgttctttgagcctttcagtattgct
tttgagaccatgcaagctatgctggttcatggatttcagttgcttgagatttggctccat
cattcgactgggaatagtgcaaattgccaaagattcaagttttttgatgcaataagagca
ggttcattgttggagtggaaaggcattcttatccgggatttgggcttttcgctagaaatg
gcagccttgataatggcacttggtcattatgtgcatatttggtggctccatggtgtggca
cttcatcttgtggacgtggtcctcttttttaatatacgtgctttgctaagcgctatcata
aagcgtataaaaggatttatcaagcttagaatggctttagatgcccttcatgcagcactt
tctgatgcaacatctgaagagctacgagcatatgatgatgaatgtgctatatgtagggaa
cctatggctaaggctaaaaggctactttgcagtcacctttttcatcttgcttgcttgaga
tcttggttggatcagggtttaaatgagatatactcatgtcccacttgtcggaagccactt
tttgtaggcaggcctgaaaatgaagcaaatactcatactggagaagttctggctgatgag
cagcttgctcatcaaatacatgaaggatttgatcggcaaaacactccaggtcatgcgctg
cttgatggggcattccctacccagattcagaactctacagagagcagcccttggagaagt
gcagggttggattcaagttggctacctactttgtccggccagggtgcggatggggctggt
ccctcaacggctatgagatcagttggattggggggagttcagatgatgatgaggcatcta
gcatctgtgggagaaacttatgcacaaactgctctcgaggatgccgcctggagcctttgg
ccaatgagtccatctcaggccactccatctgcctcttccacccctcctgctgctggtgga
agacaccctggtggcactggtggtttacatatgaggaccgcatcacactccacaaatgat
ttcatagcaaacatacttgctatggctgagacagtgcgggaggttttgccccatgttcca
gatgagttgatactccaggacttgcagcgaacaaattctgctactgttactgtaaataat
cttctgcacatgtga
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