Populus nigra (Lombardy poplar): 133701858
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Entry
133701858 CDS
T10372
Name
(RefSeq) nuclear pore complex protein NUP96
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133701858
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133701858
03036 Chromosome and associated proteins [BR:
pnz03036
]
133701858
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
133701858
Chromosome and associated proteins [BR:
pnz03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
133701858
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Motif
Other DBs
NCBI-GeneID:
133701858
NCBI-ProteinID:
XP_061981981
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Position
8:18874547..18880309
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AA seq
1067 aa
AA seq
DB search
MASSSLLPVSGSSNEIPSIRSNLSFGTSCELDFEVETLNSEGQYKKRRTSLKSEPRCEDF
RMVEALLPTLRSVDYYMEPCLMDLAAREVVDPGYCSRVLDFTVGRFGYGRVKFLGKTDVR
RLNLDQIVKFNRHEVIVYEDENAKPMVGQGLNKPAEVSLTLKLKLLDFNKGRINDVVEKL
RESMERQGAEFISFDPVIGEWKFLVCHFSRFGLSGDDEEDITMDDAAEVQDPAEMKGGEI
VDMDEETPEEVEANEPVLYHSLPAHLGLDPVRMNEMRTWMFPDDEEEVVEDLIGLRQKFP
YNKESIGSPLQNSTQRMSHRASSPVMRKTPLALLEYKPGSFDSSSPGTILLAQQHKGLTS
KMMKGVGFTLNLEHETPISGSHSCNIVDAGLFMGRSFRVGWGPNGVLVHSGAPVGGNNSQ
RFLSSIIHVEKVALDKVVRDENNKSRKELVDFSFDSPLNLHKAINRETKEVEMGSFKLKL
QKVVSNRLMLSEICRSYIDIVERQLEVPWLSSSARLVLMHQVMIWELIKVLFSERENSGQ
SKSVGADNEEDMMQDLKESSLEVDQEALPLIRRAEFSCWLQESVCHRVQDEVSSLNESSY
LEHIFLLLTGRQLDAAVEMAASRGDVRLACLLSQAGGLNHADIARQLDLWRSNGLDFNFI
EKERLRLYELLSGNIHDALHDFKIDWKRFLGLLMWYQMPPHTPLPIIFQTYQLLFVNGKA
PYPLPIYIDEGPVDADVHFSEKHFDLSYYLMLLHANGEGEFSALKTMLSAFSSTHDPLDY
HMIWHQRAVLEAVGIFTSKDLQVLDMGLVSQLLCIGQCHWAIYVVLHMPQCDDYPYLHAT
VIREILFQYCETWCSDESQQRFIENLDIPLSWLHEAMAVYFSYHGDLSKALEHYLECANW
QKAHSIFVTSVAHKLFLSADHSEIWRLAIAMEDHKSEIANWDLGAGIYISFYSIKNSFPD
DTNTMSELDSIESKNSACRDFLDHLKDSLDVLRDQLPMDARVAYSKMAEEISELLLSDPD
IREGSTRDAQLSCFDTVLRAPIPEDLRSNHLQDAVSLFTCYLSEMAA
NT seq
3204 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcttcttctctcctcccggtttccgggagttcaaatgagattccaagtataaga
agcaatctttcttttggcacttcatgtgaactggattttgaagtagaaactttaaattca
gagggtcaatacaagaaaagaagaacctctctaaaaagtgagccacggtgcgaggatttc
agaatggtcgaagctttgttgcccacattgcgttcagtagattattatatggaaccttgt
ttgatggacctggctgctcgggaagttgtggatcctggatattgcagtcgggtcctggat
ttcactgttggaaggtttggttatggacgtgttaagtttctcgggaagactgatgttagg
aggttaaatttagatcagattgtgaagtttaataggcatgaagtaattgtatatgaagat
gaaaatgctaagcctatggttggtcagggccttaataagcccgctgaagtttctttgact
ttaaaactaaaattgttggattttaacaagggacggatcaatgatgttgtagagaaattg
agggagagtatggagagacagggagctgaatttatttcatttgatcctgtaattggagaa
tggaagttcttggtttgccattttagcagatttggattgagtggcgatgatgaagaagat
atcacaatggatgatgcggcagaagttcaagatcctgctgagatgaaaggtggtgagatt
gttgatatggatgaagaaaccccagaagaagtagaagctaatgaaccagttctttatcat
tctcttcctgcacatcttggtcttgacccagtaagaatgaatgaaatgaggacatggatg
tttcctgatgacgaagaagaagttgttgaggatttgattggtctacgtcagaaatttcct
tacaataaagaaagcattgggtctcctctacagaattccactcagaggatgagccataga
gctagttcgcctgtcatgaggaaaacacctttagcactgcttgagtacaaacctggcagt
ttcgattccagctcccccggaaccattctgttggcccaacaacataagggcctgacttca
aagatgatgaagggagtaggctttacgctgaacctggagcatgaaacaccaataagtgga
agccattcttgcaacattgttgatgcaggtttattcatgggccgttcctttcgtgttggt
tggggcccaaatggagtccttgttcattctggtgctccagttggaggtaataattctcag
aggtttctatcttctattatccatgtagagaaggttgcgcttgacaaagtggtcagagat
gaaaataataaatccagaaaggaactagttgacttttcttttgactcacctttgaatctc
cacaaggcaataaaccgtgaaacaaaagaagttgagatgggttcatttaaattgaagctt
caaaaggttgtttctaatcgcttaatgctttcagaaatttgtcggagttatatagacatt
gttgagaggcagctggaggttccatggctttcatcctctgcgcgattggttttgatgcac
caagttatgatctgggagttgataaaagtacttttttctgaaagggaaaatagtggacag
tcaaaatctgtaggtgctgacaatgaggaagatatgatgcaggatttgaaagaaagttct
ttggaagttgaccaagaagcacttcctcttatacggagagcagagttcagttgttggctg
caagaaagtgtttgccatcgtgtccaagatgaagtgagctccttgaatgaatccagttat
ctagaacacattttcttacttctgaccggaagacaactggatgcagctgtggaaatggct
gcttctagaggggatgtaagactggcatgtttgttgagtcaggctggtggattgaatcat
gctgacattgcacggcagcttgatctttggaggtcaaatggcctggacttcaatttcatt
gagaaggagagattaagactttatgagttgctttctggcaatattcatgatgctttgcat
gattttaaaattgattggaagaggttcttagggttactgatgtggtatcaaatgccacct
cacacgccattgcccatcatttttcaaacctatcagctcctttttgtcaatggtaaggcc
ccatatcctctcccaatttatatcgatgaagggccagtagatgcagatgtgcatttttca
gagaaacactttgatctctcatactatctcatgcttcttcatgctaatggcgagggtgaa
tttagcgctttgaagaccatgcttagtgccttctcatcaacacatgatccacttgattat
catatgatctggcatcagcgagcggtgttagaagcagttggcattttcacttctaaggat
ctacaagttctagacatgggacttgtttctcagctcctgtgtattgggcagtgccattgg
gccatatatgtggtccttcacatgcctcaatgtgatgattatccatatctccatgctact
gttatccgagaaattttgtttcaatactgtgaaacatggtgttctgatgaatcacaacaa
cgatttattgagaaccttgacattccattatcatggttgcatgaagctatggcggtttat
ttcagttaccacggggatctctcaaaggcccttgagcactatcttgaatgtgcaaattgg
caaaaggctcattctatttttgtaacttcagttgctcataaattatttttgtcagctgac
cactcagagatttggaggcttgcaattgcaatggaggatcataaatctgaaattgcaaat
tgggacctgggagctggaatttacatatcattctattcaataaaaaattcatttccggat
gacaccaataccatgagtgagctggattctattgagagcaaaaattctgcctgcagagac
ttccttgatcatcttaaggactctttagatgttttgcgggaccaattaccaatggatgca
agggtagcgtattcaaagatggcagaggagatctcagaattgcttctatctgatcctgat
ataagagaggggtcaacacgagatgctcagttaagctgctttgacactgttttgagagct
ccaattcctgaagacctccgctcaaatcatttgcaggatgccgtctctctctttacatgt
tatctttcagagatggctgcctag
DBGET
integrated database retrieval system
