Populus nigra (Lombardy poplar): 133702360
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Entry
133702360 CDS
T10372
Name
(RefSeq) chaperonin CPN60-2, mitochondrial-like
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133702360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133702360
03110 Chaperones and folding catalysts [BR:
pnz03110
]
133702360
03029 Mitochondrial biogenesis [BR:
pnz03029
]
133702360
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pnz04147
]
133702360
Enzymes [BR:
pnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
133702360
Messenger RNA biogenesis [BR:
pnz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
133702360
Chaperones and folding catalysts [BR:
pnz03110
]
Heat shock proteins
HSP60 / Chaperonin
133702360
Mitochondrial biogenesis [BR:
pnz03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
133702360
Exosome [BR:
pnz04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
133702360
Exosomal proteins of other body fluids (saliva and urine)
133702360
Exosomal proteins of breast cancer cells
133702360
Exosomal proteins of colorectal cancer cells
133702360
Exosomal proteins of bladder cancer cells
133702360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
CO_dh
Motif
Other DBs
NCBI-GeneID:
133702360
NCBI-ProteinID:
XP_061982681
LinkDB
All DBs
Position
8:18444510..18449350
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AA seq
574 aa
AA seq
DB search
MHRFTSSLASKARIARSTTKQIGSRLSWSRNYAAKDIRFGVEARAVMLKGVEELADAVKV
TMGPKGRNVVIEQSFGAPKVTKDGVTVAKSIEFKDKVKNVGASLVKQVANATNDAAGDGT
TCATVLTRAIFAEGCKSVAAGMNAMDLRRGISMAVESVVTNLKSRTRMISTSEEIAQVGT
ISANGEREIGELIAKAMEKVGKEGVITIQDGKTLSNELEVVEGLKLDRGYISPYFITDQK
TQKCELDDPLILIHDKKVSNLHAVVKVLELALKRQRPLLIVAEDVESEALATLILNKLRA
GIKVCAIKAPGFGENRKATLQDLAVLTGAEVITEELGLNLEKVDLDMLGSCKKVTVSKDD
TVILDGAGDKKSIEERCEQIRSAVESSTSDYDKEKLHERLAKLSGGVAVLKIGGASEAEV
GEKKDRVTDALNATKAAVEEGIVPGGGAALLYASKELDKLQTANFDQKIGVQIIQNALKT
PVHTIATNAGVEGAVVVGKLLEQDNPDLGYDAAKDEYVDMVKAGIIDPLKVIRTALVDAA
SVSSLMTTTEAVITELPKDENDAPAMGPGMGMDY
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgcaccgcttcacttctagcctcgcttccaaggctcggattgctaggagcaccaccaaa
caaattggaagtaggttgagttggagcagaaactatgctgccaaagacataagattcggt
gtggaggctcgtgctgtgatgcttaagggtgttgaagagctagctgatgctgtcaaagtc
accatgggccctaagggtcgcaatgtggttattgaacaaagctttggtgcccccaaagtg
actaaggatggtgtgactgttgcaaagagcattgagttcaaggataaagtcaagaatgtt
ggtgctagcctcgtgaagcaggttgcaaatgccacaaatgatgctgcaggcgatgggacc
acttgtgctacggtcctcactcgagcgatatttgctgaagggtgcaagtcagttgcagca
ggaatgaatgcaatggacctaagacgtggtatcagcatggctgtggaatcagttgttact
aatttgaaaagcagaacaagaatgatcagcacatccgaagaaattgcacaagttggtaca
atatcagcaaatggggagagagaaattggtgagttgattgcaaaggccatggagaaggtt
gggaaagagggagttataacaattcaagatgggaaaacattatctaatgagttggaagtt
gttgagggattgaagcttgacaggggctatatatccccttatttcatcacggaccagaaa
acccaaaaatgtgaattggatgaccctctcattctgatccatgacaagaaagtctcaaat
ttgcatgctgtggtgaaagtactagagttggctttaaagagacaaaggcccttgctgatt
gttgctgaagatgtggagagtgaggcactggcaacacttattttaaataagcttcgtgct
ggaatcaaggtctgtgccattaaggcccctggttttggagagaacaggaaggctacattg
caggatcttgctgtcctcacaggagccgaagttataactgaagagcttggcctcaatctt
gaaaaggtggatttggatatgcttggcagttgcaaaaaggttacagtatcaaaggatgac
actgttattcttgatggtgctggtgacaagaagtccattgaagaaagatgtgaacagatc
cgatctgcagtagagtcgagtacttctgactatgacaaagagaagttgcatgaaagactg
gcaaagctttctggtggtgttgctgtgctgaagattggaggagctagtgaagctgaagtt
ggtgagaagaaagatagagttacagatgccctaaatgccacaaaggctgctgtggaagag
ggtattgtgccaggaggtggtgctgcacttctttatgcatcaaaagagttggataagctg
caaactgccaactttgaccagaagatcggtgttcaaattattcagaatgccctgaagacc
cctgtgcatacaattgctactaatgcgggagtcgagggagctgttgttgttggtaagcta
ttggagcaggacaaccctgatctagggtatgacgctgccaaagatgaatatgttgatatg
gtgaaagctggcattattgacccgctgaaagtaattagaactgctttggtcgatgccgcc
agtgtctcctcgttaatgacaacaactgaggctgttataactgagcttccaaaggatgaa
aatgatgctccggcaatgggtccaggcatgggcatggattactga
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