Populus nigra (Lombardy poplar): 133702773
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Entry
133702773 CDS
T10372
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7
KO
K14409
protein SMG7
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03015
mRNA surveillance pathway
Brite
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
133702773
mRNA cycle factors
Common to processing body (P body) and stress granule
133702773
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GFIT
Other DBs
NCBI-GeneID:
133702773
NCBI-ProteinID:
XP_061983078
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Position
1:complement(21639472..21645195)
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AA seq
972 aa
AA seq
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MIVQMDKMSAPSPRERAQRLYEKNLELENKRRRSAQARVPSDPNSWQQMRENYEAIILED
HGFSEQHNIEYSLWQLHYRRIEELRTHYSAVLASIGSNAPPGPKVPARPDRINKIRLQFK
TFLSEATGFYHDLILKIRAKYGLPLGYFSEDSDNRAVTETDAKKGLVSCHRCLIYLGDLA
RYKGLYGDGDSKTREYAAASSYYLQAASLWPSSGNPHHQLAILASYSGDELVAVYRYFRS
LAVDNPFATARDNLIVAFEKNRLSYSQLLGDAKVSGVKDSPVRLTGKGRGKREANPASKD
MKLEAGAVKEKTSSIREIHKSFCVRFVRLNGILFTRTSLETFSEVLALVSIGFSELVSSG
PEEELNFGADASENGLFIVRLISILIFTVHHVKKEAEGQTYAEIVQRAVLLQNAFTAVFE
FMGHVLDRCAQLHDPSSSYLLPGIMVFVEWLACCPDIASGSDIDEKQSAVRLNFWNHCIS
FLNKIVSCCSMSLDDNEDETCFFNMSRYEEGETENRLALWEDFELRGFSPLLPAHTILDF
SRKHLFGSDGSKEKIARAKRILAAGKALANMVRVDQQTIYFDSKMKKFVIGAEPQISVDG
LLIAADVIQEVQPEETMNLVALQPNPHPYTEGEEEDEVIVFKPVVTEKRNDVLSPKWAPH
EGLKPSRNAADDLHFYGSSVSAPLDNLRQQAAFDAGSQISVSHGTIVPQPLQLIQPHTSK
WLVEEAASLANGLKGVRFMENGHVMEHEMQKDLGMAYQAVRPVSVQQSLNVNTGMFYGQT
TVAENAVPSKVDTYAPSGVIAESLAVKTSAALPPGFRKSPVSRPLRHLGPPPGFNSVPPK
QASEPVSGSVLMAENPLQDDYSWLDGYQLPSSAKVSGLNGSANVTSHAAPQYTSNSSGLS
GTASFPFPGKQVPPVQTQAEKQKGWQNYLGFEHQRVQQEHQLQQQLINGNQQFSPIPEQY
HGQSIWGGRYIV
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgattgtgcagatggataaaatgtctgctccttcaccacgggagcgagcccaacgcctg
tatgagaagaaccttgagttggagaataagcgccggaggtcagctcaggctcgagttcca
tctgatcccaattcatggcaacagatgcgtgagaactatgaagcgataattcttgaggac
catggtttttctgagcagcacaatatagaatattctctgtggcaattgcattataggcgc
atagaggaactaagaactcactatagtgctgttttagcttctattggctcaaatgcacct
ccaggtccgaaagttcctgcacgacctgatcgaatcaacaagataaggcttcaatttaaa
acattcctttcagaagcaactggattttatcacgatctgattctgaagatcagagcaaag
tatgggcttcctctgggttatttttctgaggattcagataatcgagctgttacggagact
gatgctaagaaaggtttggtctcttgtcaccgttgtttgatatacttgggtgacctggct
aggtataaaggactatatggggatggtgactccaaaactcgtgagtatgcagcagcttca
agttactacttgcaagctgcatctctgtggccatcaagcgggaacccccatcaccagctt
gccattttggcttcctattcaggggatgagttggtggctgtgtatcgctattttaggagt
ctggcagtggataatccctttgcaactgcaagagataacttgattgttgcttttgagaag
aatcgtctgagctactctcagctgcttggggatgcgaaagtctctggtgtcaaggattca
cctgtgcgcttgactggcaaaggtagagggaagagagaagcaaaccctgcatctaaggat
atgaaactggaagcaggtgctgtcaaggaaaagacatctagtattcgtgagattcacaag
tccttctgtgttcggtttgtccgactgaatggcattcttttcacacgcactagcttggag
acattttcggaagttctggcactggttagcattggattctcagagcttgtttcttctgga
ccagaagaggagctgaattttggtgcagatgcttctgaaaatggacttttcattgttcgc
ctcatctcgattcttatatttactgttcaccatgtgaagaaggaggctgaaggtcagaca
tatgcagaaatcgtgcagcgtgctgttctgcttcagaatgcctttactgctgtttttgag
ttcatgggacacgtattagataggtgtgcacaacttcatgatccctcctcaagttaccta
ttacctggcattatggtttttgtagaatggttggcttgttgtcctgacatagcatcaggc
agtgacatagatgagaaacagtcagctgtaagattgaacttttggaatcactgcatatca
tttttgaacaagattgtttcatgttgctcaatgtctcttgatgacaatgaagacgagaca
tgcttttttaacatgagccgttatgaagaaggagaaacagaaaaccggcttgctttgtgg
gaagactttgagttgagagggttttcaccacttcttcctgcacatactattttagacttt
tcaaggaagcacttgtttggaagcgatggcagtaaggaaaaaatagctcgtgctaaaagg
attctagcagcagggaaggccttagcaaatatggtcagggtcgatcagcaaacaatatat
tttgattcaaagatgaaaaaatttgttattggtgctgagcctcaaatttcagttgatggg
ttgttgatagctgctgatgtgattcaagaagtgcagcctgaagaaacaatgaatttggta
gctttgcagcctaatccacacccatacactgaaggtgaagaggaagatgaagtgattgtt
ttcaagccagtagtgactgagaagcgaaatgatgtgcttagtccaaaatgggcccctcat
gaaggtctaaaacctagtcgaaatgcagcagatgatttgcacttttatggcagttctgtt
tcagcccctcttgataatcttcggcagcaggctgcttttgatgcaggttctcagatatct
gtatctcatggtactattgtccctcagcctctccaacttatccagcctcatacttcaaag
tggttagttgaagaagctgcttctcttgccaatggcttgaaaggtgtcaggttcatggaa
aatgggcatgtcatggaacatgagatgcagaaagatttaggcatggcctatcaagctgtt
cgtccagtttctgtccaacaatctttgaatgtaaatactggtatgttttatggtcagaca
acggtggcagaaaatgctgttccatcaaaggttgatacttatgctccttctggagttatt
gctgaaagtttggctgtgaagacatcggcagctttgccaccaggtttcagaaaaagtcca
gttagccgacctctaaggcaccttgggcctcccccaggttttaattctgttcctcctaag
caagcgagtgaaccagtttctggttcagttttgatggctgagaatccactacaggatgat
tatagctggttggatggctatcagctgccatcatcagcaaaagtctctggactcaatggt
tctgctaatgtcacttctcatgcagcaccacagtatacgagtaacagcagtggcttaagt
gggacagccagctttcccttccctgggaaacaggtaccgccagtgcaaacccaagcagag
aaacagaaaggctggcagaactatctgggttttgagcatcaacgggtacagcaagaacac
cagctgcagcaacaactcattaatggaaaccagcagttttctccaattcctgagcaatat
catggacagtccatctggggtggtcgttatattgtgtga
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