Populus nigra (Lombardy poplar): 133703498
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Entry
133703498 CDS
T10372
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03015
mRNA surveillance pathway
Brite
Transcription machinery [BR:
pnz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
133703498
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
133703498
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133703498
NCBI-ProteinID:
XP_061984046
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Position
9:1769912..1777083
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AA seq
1014 aa
AA seq
DB search
MQSTKLLNPKTATKAAEAVTNTMPNELLPQKSPASSILDKFRYLLKQRQQSAVEEGGGLS
TEDMVEIYETVLNELTFNSKPIITDLTIIAGELRGHGEGIADALCGRIVEVPVDLKLPSL
YLLDSIVKNIGREYIGYFSSRLPEVFCEAYGQVDPRLYSSMRHLFGTWSSVFPSSVLRKI
ETQLKLSSQINNQSSSLTSLKASESPRPSHGIHVNPKYLRQMDSSRDNNVQHTKGTSSNL
KMYGHKPAVGYETDQAEVISSQVGVDRASLTLGSNKLQPSSTSRLARCLSPSTTGAERPS
SSEIDDFAAGNSPRRFVEGLSPSHPPFDYGHGRVVVRDDETNELRRKHYSDDNHYRFEAS
ARSLSNGHEQQGPRALIDAYGDDRGKRIPNSKPLHIEQLAVIGMHNKVAPRSWQNTEEEE
FDWEDMSPTLLDRGSCNDFLPPSVPPFGSVVPRPGFGRLNAIRADSDIRSNGSSLTPMAL
VDDSSNMGGDAVSILGSGRGSTSKMPGLLTERNQISGSRYSQEAWNLPPHIRQPSHPLNA
KGRGRDFRMPLSGSGVSSLGGENFNPLVEKLPDMDAQLVRPPAIASRLGSSIDSNSSGTW
SSAVLPLSGAWPPVNVHKSLPPPVHSTFPPENQSRSQFDPVNTSSTVTNQALQKASVMPE
QSFNSFESKDYVLMKPTPLPNQHAALNQQNQAHFNPFQPKFLQSHEARENFHPSGIALLP
PRPLARPMNHGYTTHGHGSSNALPSVQLPLAVSNVPNTLHSQVGVRPPLPQGPPQTMPFP
QNASSGAPAQPSGIAFSGLINSLMAQGLITMTKQTPVQDSVGLEFNADLLKLRYESAISA
LYSDLPRQCTTCGLRLKCQEEHSSHMDWHVTKNRMSKNRKQNPSRKWFVSASMWLSGAEA
LGTDAVPGFLPTETIVEKKDDDEMAVPADEEQSTCALCGEPFDDFYSDETEEWMYKGAVY
LNAPDGSTADMDRSQLGPIVHAKCRSDSSGVPSEDFGHEEGGNTEEGSRKRMRS
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atgcaatccacaaaactcctaaaccctaaaaccgccaccaaggcagcggaagccgttacc
aacaccatgccaaatgagctgctgccgcagaaatccccagcatcttcaatactggacaag
ttcaggtatttattgaagcagcgacaacaatcggcggtggaggaaggtggcggcttgagt
acggaggatatggtggagatttatgagacggttttgaatgaattaacgtttaattcaaaa
cctattatcactgatttgactattattgccggagaactgagggggcacggtgagggtatt
gctgatgctctttgtggccgcattgtcgaggtcccagtagatctaaagctaccttcgtta
tatcttttagatagcattgtcaagaacatcggccgtgaatacattgggtatttttcttcc
cgtttgcctgaggttttctgtgaggcatacggacaagttgaccctagattatattcttca
atgcgccacctttttggcacttggtcatctgtgtttccatcttctgtacttcggaagatt
gagactcaactgaaattgtcttcacaaattaataatcagtcatcaagtttgacttccttg
aaggcttctgaatcacccagaccaagtcatggcatacatgtgaacccaaaatacttacgt
cagatggattcaagtagagataataatgttcagcacacaaagggaacttcttcaaatcta
aaaatgtatggtcacaaacctgctgttggatatgaaactgatcaagcagaggtcatatct
tcacaggttggagtcgaccgtgcatctctcactcttggatctaataagctgcagccatca
tcaacttccaggcttgcaagatgcttgtcgccttcaacaactggagctgagaggccttca
tcttcagaaatcgatgactttgcagcaggaaattctccccgaaggttcgtggaggggttg
tccccatctcatcctccatttgattatggacatggcagagttgttgtcagagatgatgag
acaaatgaattgagaagaaaacactattctgatgataaccattaccgatttgaagcttct
gccagatctctcagcaatggacatgagcaacaaggaccaagagctttaatagatgcatat
ggggatgatagggggaagagaattccaaatagtaaaccattgcacattgaacagttggct
gtaattggcatgcataataaggtggctccaagatcatggcagaatactgaagaggaggaa
tttgattgggaagatatgagccctactttgttagatcgtggtagttgcaatgatttcttg
ccaccatctgttccaccttttggaagtgttgttccaaggcctggctttggaaggctaaat
gctatccgtgcagactctgatattaggagcaatgggtctagtctgactccaatggctttg
gtggatgactcctctaatatgggtggagatgcagtctcgattcttggttctggccgtgga
tcaacaagcaagatgcctggactcctgactgagagaaatcagatatcgggttctcgttat
tctcaagaagcttggaatttgccgcctcacatccgtcagccatctcatcccctgaatgcc
aaaggaagaggaagggatttccggatgcccttatctggaagtggtgtatcctctttgggt
ggcgagaatttcaatccacttgttgaaaaacttccagatatggatgcacagcttgttagg
cctcctgcgattgcatcaagattgggttctagtattgactctaatagttctggtacctgg
tcaagtgctgtgctcccattatcaggggcctggcctccagtaaatgtacacaagtctctc
ccacctcctgtgcattctacttttccaccagaaaatcagagtagaagtcagtttgatcca
gtaaataccagcagtactgtcacaaatcaggctttgcaaaaagcttcagttatgcctgag
caatcatttaatagttttgagagcaaagattatgttttgatgaagccaacaccattgcct
aatcaacatgctgctttgaatcagcaaaaccaggcacattttaatccttttcagccaaag
tttcttcaatctcatgaagcccgagaaaattttcatccatctgggatagctttactgcca
cctcgtccactggcacgaccaatgaatcatggatacaccacacacgggcatggttcctca
aatgcgctaccttctgtacaactgcctttagcggtcagcaatgttccaaacaccttgcat
tcacaggtgggggttcggccacctttgccacaaggtcctcctcaaacgatgcctttccct
cagaatgctagttcaggtgcccccgcccaaccatccggcattgcattttctggtttgatt
aattctctcatggctcaaggtttgatcacaatgacaaaacaaacacctgtacaggactct
gtagggcttgagttcaatgctgaccttctcaaattgcgctatgaatcggcaataagtgca
ttatattctgaccttccaagacagtgcacaacatgtggccttcgattaaagtgtcaagaa
gagcacagtagtcacatggattggcatgttactaagaaccggatgtccaaaaaccgcaag
cagaacccttctcgcaagtggtttgtaagtgcaagtatgtggcttagtggtgcagaggca
ttgggaactgatgcagttcctggatttttacccactgagaccatcgtggagaagaaggat
gacgatgaaatggctgttcctgctgacgaagagcagagtacatgtgcgttatgtggagag
ccttttgatgatttctacagtgatgaaactgaggaatggatgtataaaggagctgtctac
ctgaatgctcctgatgggtcaacagcagacatggataggtctcagctaggccctattgta
catgctaaatgcaggtccgattctagtggggttccttctgaagattttggacatgaagaa
gggggcaatactgaagaaggtagtcgaaaacgaatgcggagttaa
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