Populus nigra (Lombardy poplar): 133703501
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Entry
133703501 CDS
T10372
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1-like isoform X1
KO
K14411
RNA-binding protein Musashi
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133703501
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133703501
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
133703501
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
133703501
NCBI-ProteinID:
XP_061984058
LinkDB
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Position
9:9778631..9782868
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AA seq
488 aa
AA seq
DB search
MESDLGKLFIGGISWDTDEERLKEYFSKYGEVVEAVIMRDRATGRARGFGFVVFADLTVA
ERVIMEKHVIDGRTVEAKKAVPRDDQHILSRSISNIHGSPGPGRTKKIFVGGLASTVTEN
EFKKYFEQYGIIIDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR
AVPKELSPGPSRSPLMGYNYGLTRANNFLNSYAQGYNMSSVGGFGMRMDGRFNPLVTGRS
GFAPFGTNGYGTSMNLEPVLSPSYGGGSNFGNAPAYGRISSPYYSSNPSRYSTPIGYGVG
NARNDSLLSPTSRNVWGNGGLNTATNPGSPSPLVGSGSGNFGVSFGNNGANWGTSTVSAQ
GGGIASGYTSGSMGYGNGDSNYSFGGSGYARNSGASVPPTSSSFSGSIGGYEGSYGELYR
SGSVYGDSTWRTAIPELDGSGSFGYGLGDVASDVTTKSSEGFIGSYGVTSRQSNRGEGIS
LNRANEGS
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atggaatcagatcttggtaagctcttcattggtgggatttcatgggacactgatgaggaa
cgtctaaaggaatattttagcaagtatggggaagtggttgaggcagtgatcatgagagat
cgagcaacaggccgtgcccgtggctttggttttgttgtctttgcagatcttactgttgcc
gagagggtcatcatggagaagcatgtgattgacggccgcacggttgaagcaaagaaggct
gttcctagggatgatcagcacattttaagtagaagcattagtaatattcatggttctcca
ggtcctggacgcaccaaaaagatttttgttggaggcctggcatctacagttaccgaaaat
gaatttaagaagtactttgagcagtatggtattattattgacgttgtagtgatgtatgat
cataacactcaaaggccaagaggctttggcttcatcacttatgattcagaggaagcagtt
gacagagttctgcataaaacatttcatgaactcaatggtaaaatggttgaggtcaagcgg
gcagtcccaaaggagttatcaccagggcctagtcggagccctctgatgggatacaactac
ggtttgacaagggctaacaactttcttaattcatatgctcagggatataatatgagctct
gttggaggttttggaatgaggatggatggtaggtttaatccacttgtcactggtcgaagt
ggctttgctccatttggcaccaatggttatgggacgagtatgaatttagagccagtcttg
agtccaagctatggtggaggttccaactttggcaatgctcctgcatatgggcggatctca
agtccctattatagtagtaatccaagcaggtacagcaccccaataggttatggtgttggg
aatgcaagaaatgattctctcttgagccctactagtaggaatgtttggggaaatgggggc
ctcaacactgccacaaatcctggcagcccgagtcctctggtgggatctggatctggaaat
tttggagtttcatttgggaataatggagcaaattggggcacctctactgtttcagctcaa
ggtggagggattgcttctggctatactagtggcagcatgggttatgggaatggtgacagc
aattatagttttggtgggtcaggatatgcaagaaacagtggagctagtgtaccaccaact
tcatcatcattctctggttcaattggtggttatgaggggtcctatggggaactttaccgt
agtggttcagtttatggtgattcaacttggcgaactgcaatccccgagctagatgggtcc
ggatcatttggttatggactcggagatgtagcttcagatgttacaactaagagttctgag
ggttttattgggagttatggcgttacaagtagacagtcaaatagaggtgaaggaatctct
ttaaacagagctaacgagggttcttga
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