Populus nigra (Lombardy poplar): 133703556
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Entry
133703556 CDS
T10372
Name
(RefSeq) E3 ubiquitin-protein ligase SIRP1-like
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
pnz Populus nigra (Lombardy poplar)
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pnz04131
]
133703556
04121 Ubiquitin system [BR:
pnz04121
]
133703556
Enzymes [BR:
pnz01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133703556
Membrane trafficking [BR:
pnz04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
133703556
Ubiquitin system [BR:
pnz04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
133703556
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
Zn_ribbon_19
zf-C3HC4_2
zf-RING_11
zf-C3HC4
zf-rbx1
zf-RING_UBOX
zf-ANAPC11
zf-C3HC4_3
Zf_IFT144_1st
zf-RING_5
Zn_ribbon_PF0610
Motif
Other DBs
NCBI-GeneID:
133703556
NCBI-ProteinID:
XP_061984178
LinkDB
All DBs
Position
1:complement(50420304..50422817)
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AA seq
377 aa
AA seq
DB search
MEEAMAARYWCHMCSQMVNPVMEVEIKCPFCQSGFIEEMSSSTGDTQVPDSEFGSDRALS
LWAPILLGMMGNSRRRRRLRRMEYEEGEDDNDDGEANLGGETEFEHEIESFIRRRRRSRR
SSATILQLLQGIRAGILASESENSEGDRDGERDRDRDRDRERVILINPFNQNIIVQGSYD
SNNDENQNQNPIGSFGDYFIGPGLDLLLQHLADNDPNRYGTLPAQKEAVEALPTVIIKEP
LQCSVCLDDFEIGSKAREMPCKHKFHSGCILPWLELHSSCPVCRHQLPADESKLDSERAR
NSSDRREFENTNSESNISHGISVEEGDREERSGNGRSFSFPWPFNSLFSSSSGSQSGGNH
PSSPANAPGSTSQTDEN
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagcaatggctgcacggtactggtgccatatgtgctctcaaatggtgaatccc
gtcatggaagttgagatcaaatgccctttttgccaaagtgggttcattgaagaaatgagt
agtagcacaggggatactcaggttcctgattctgaatttggatctgatcgtgccctctca
ctttgggctccaatcttgcttggcatgatgggaaattctcgtcgccgtagaaggcttaga
aggatggagtatgaagaaggtgaggatgacaatgatgatggtgaagcaaaccttggagga
gagactgaatttgagcatgaaattgaatcattcataaggaggaggaggaggagcagaaga
agttcagctacaatactgcaattacttcaaggaattcgtgctggaattttggcatcagaa
tctgagaactcagaaggagatagggatggggagagggacagggaccgggacagggacaga
gagcgtgtcattttgatcaatccttttaatcaaaatattattgttcagggttcttatgat
tcaaacaatgatgaaaaccagaatcaaaatccaattgggtcattcggtgattatttcatt
ggacctggcttggatttgttattgcagcacttggcagataatgatcccaatagatatgga
actctgccagctcaaaaggaagccgttgaagcattgcctactgtgatcatcaaggagcct
ttgcagtgttcagtgtgcttggatgattttgagattggctccaaggcaagggaaatgcca
tgtaagcacaagtttcatagtggctgtatattgccatggctggagcttcatagttcctgt
ccagtttgcaggcatcagttgcctgctgatgagtccaagcttgattctgagagagctaga
aatagcagtgatcggagggagtttgagaatactaatagtgaaagtaatattagtcatgga
attagtgttgaagagggagacagggaagaaagaagtggaaatgggagaagtttttccttt
ccatggcctttcaatagcttgttttcatcttcatcgggttcgcaatctggtggaaaccat
ccatcctctccagcgaatgcacctggaagcacttctcaaacagatgagaattga
DBGET
integrated database retrieval system
