Populus nigra (Lombardy poplar): 133703734
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Entry
133703734 CDS
T10372
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133703734
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pnz03021
]
133703734
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133703734
Transcription machinery [BR:
pnz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
133703734
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
133703734
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
Torus
zf-CCCH
zf-CCCH_2
zf-CCCH_12
zf-CCCH_3
PL48
MUCL1
Motif
Other DBs
NCBI-GeneID:
133703734
NCBI-ProteinID:
XP_061984346
LinkDB
All DBs
Position
9:complement(10094428..10111412)
Genome browser
AA seq
696 aa
AA seq
DB search
MEDPEGVLSFDFEGGLDSGPTNPSASMAAIPSDNQGSAMAAAPNTATTGASTSNTTTNNS
SDSGAADMQAGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECREQ
DCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVVEAVQKTQQLNSYNYGNS
NKFFQQRTAGVPQQIEKSPITIIKPSGTESANLQQQQQQQQPQTQTQAQAPNLPNGQQQP
SPLNRIATTLPQGISRYFIVKSCNLENLELSVQQGVWATQRSNEPKLNEAFDSAENVILI
FSVNRTRHFQGCAKMTSKIGASVGGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLR
NPFNENLPVKISRDCQELEPSIGEQLASLLYLEPDSDLMAISVAAEAKREEEKEKGVNPD
SGGENPDIVPFEDNEEEEEEESEEEVEAFGHPLGAAAQGRGRGRGIMWPPHIPIARGARP
IPGMRAFPPMMMGADGFSYGAVTPDSFGMPDLFGVAPRGFAPYGPRFSGDFTGATSGMMF
PGRPSQPGAMFPAGGFGMMMGSGRAPFMGGMGPTASNPLRGPRPGGMFAPLLASSSQNNN
RSFKRDQRAAPSDRIDRHGIESDLVRGAAGESNDETRYPQETYKASHEDQFGAVNSNRND
ESESEDEAPRRSRHGEGKKKRRGSEGDANPGSDHKQ
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggaggacccagagggggttttaagcttcgacttcgagggcggcctcgactcggggccc
acgaaccctagcgcctccatggcagcgatcccatctgacaatcagggatccgcaatggca
gctgcgcccaacaccgcaaccaccggcgccagcaccagtaacaccaccaccaacaacagc
agcgactctggtgcggcggacatgcaggcggggcgacggagcttccggcagactgtatgt
cggcactggcttcgaagcctttgtatgaaaggcgacgcctgcggatttcttcaccaatac
gacaagtctagaatgcctgtatgtcggttttttagactttatggagagtgcagggagcag
gattgcgtttacaagcacaccaatgaagatatcaaggagtgcaatatgtacaagctgggg
ttttgtcccaatggtccagactgcaggtataggcatgcaaagttgcctggacctccacct
ccggttgtagaagctgttcaaaagactcagcaattgaattcttacaattatggaaactct
aacaaattttttcaacaacggactgctggtgttccccaacagatagaaaagtctcccatt
accatcataaaaccttcaggaacggaatctgctaatttgcagcagcagcagcagcagcag
cagccacagacacagacacaggcacaggcaccaaatcttccaaatggccagcaacagcct
agtccattgaacagaattgcaacgactttacctcaaggaatatctaggtacttcattgtt
aagagctgcaacctcgaaaatttggagttatctgtgcagcaaggagtatgggcaacacaa
aggagcaatgaacctaaactgaatgaagcttttgactctgctgaaaatgtaatcttgatt
ttctcagtaaaccggactcggcattttcagggttgtgcaaagatgacatccaaaattggt
gcttctgttggtggagggaattggaaatatgcacacggaactgcacattatgggaggaat
ttctcagtcaaatggttgaagttgtgtgaactgtccttccacaaaactcgtcacttgaga
aacccgttcaatgagaacttaccagtgaagattagtagagattgtcaggagctagaaccc
tctattggtgagcaattggcgtccttgctttacctggagccagatagcgacctcatggca
atctcagttgcagctgaagcaaaacgagaagaggaaaaagaaaaaggagtcaatcctgac
agtggtggtgaaaaccctgacattgtcccatttgaggacaatgaagaagaggaggaggaa
gaaagtgaagaggaggtggaagccttcgggcatcctcttggagcagcagctcaaggcaga
gggagaggtagaggaatcatgtggcctcctcacattccaattgcccgtggggcaagaccc
atccccggcatgagagcttttccccccatgatgatgggtgctgatggtttttcatatgga
gctgttacacctgatagcttcggaatgccagatctctttggtgtggctccccgtggattc
gccccatatggtccaaggttttctggtgattttactggtgctacatctggcatgatgttt
cctgggcggccttcccagccaggagctatgtttccagctggtggatttgggatgatgatg
ggttcaggacgtgctccttttatggggggaatgggtcccactgcatcaaatcctcttcga
ggccctcggccaggtggcatgtttgcaccccttctcgcatcatcctcccagaacaataac
aggtcttttaagagagatcagagagcagcacctagtgatcgaattgacagacatggtata
gaatcagatctggttaggggtgcagctggggaatcaaatgatgagacaagatacccgcag
gaaacatacaaggcttcccatgaagatcaatttggtgctgtaaatagcaatagaaacgat
gagagtgaaagtgaggatgaggcacctagacggtcaaggcacggggaggggaagaagaag
cggcgaggatcagaaggagatgctaatcctggctcggatcacaaacagtaa
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