Populus nigra (Lombardy poplar): 133704402
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Entry
133704402 CDS
T10372
Name
(RefSeq) probable pectate lyase 5 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz00040
Pentose and glucuronate interconversions
pnz01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
133704402
Enzymes [BR:
pnz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
133704402
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
SpGH101_helical
Motif
Other DBs
NCBI-GeneID:
133704402
NCBI-ProteinID:
XP_061985194
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Position
10:complement(14876055..14881174)
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AA seq
507 aa
AA seq
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MSYITILFYYINHRKHLTYSPKIFSFLRTFSLSLFIHSSLKFLFFSRQAKGRVNASLSRR
NLLSIQEKDQCQTGNPIDDCWRCDPNWANNRQRLADCAIGFGQGTLGGRGGQIYVVTDSS
DHNPANPTPGTLRYAVIQDQPLWIIFSSDMVIKLKHELIFNSYKTIDGRGANVHITGNGC
ITLQHVTHIIIHNIHVHHCKPSGNANIASSPTHVGQRGESDGDGISISGSQKIWIDHCSL
SYCTDGLIDAILGSTAITISNNHFTHHNEVMLLGHNDKYVLDSGMQVTIAFNHFGVGLVQ
RMPRCRRGYIHVVNNDFTAWEMYAIGGSANPTINSQGNRYTAPADDNAKEVTKRVDTNEG
EWADWNWRTDEDILVNGAFFVPSGAGLSEQYSKASSVEPRSARLITELTMNAGVFGDPRD
DSGGISNPGFSGAGTSTVTPTTGTQGTGASGGTDGDYFGMIFGSGSSLPRPPTSISLIFL
SLLIILALSTITNNGALLSFPLLSLFK
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgtcatatattacaatcttgttttattatataaaccaccgcaaacacctcacatattcc
cccaaaattttcagcttcctacgtactttttctttgtcgttgttcattcactcctcttta
aaattcttgttcttctctagacaagcgaaagggagagtcaatgcatctctatcaagaaga
aaccttttgtccattcaagaaaaggaccaatgccaaaccggaaaccccatcgacgattgt
tggagatgcgaccccaattgggctaacaaccgccaacgtttagctgactgcgctattggg
tttggtcaaggcacattaggtggtagaggtggccagatctatgtggtcactgactcctcg
gaccataacccagccaaccccacaccaggcacgttacgttatgctgttatccaagaccaa
cctctttggatcatcttttcttcggacatggtcattaagctcaaacatgaacttattttc
aacagttacaaaactattgatggccgtggcgcaaatgtgcacattacaggaaatgggtgc
ataacacttcaacatgtgacacatattattatccacaacatccacgttcaccattgcaag
ccttctggtaacgctaatatagcatcatcaccaacacatgttggacagagaggggaatcg
gatggtgatggtatttccatctctgggtcccagaagatttggattgatcattgttcatta
tcgtattgtactgatggtttgattgatgctatactggggtctactgcgattaccatatca
aacaaccattttacgcaccataatgaagtgatgctattggggcacaatgataagtatgta
ttggactcaggaatgcaagttactatagcttttaatcacttcggtgtagggctggtccag
cgtatgccaaggtgtagaagagggtatatacatgtggtgaacaatgattttacagcttgg
gagatgtatgctatcggtggtagtgcaaaccctaccataaatagtcaagggaatcgatat
actgcaccagccgatgataatgccaaagaggtaacaaagagggtggacacaaacgaggga
gagtgggcagattggaattggagaacagacgaggacatcttggtaaatggagccttcttt
gtgccctcaggagctggtttgagtgagcaatatagcaaagcctccagcgtggaacccagg
tctgctaggttaattacagaactcaccatgaatgctggtgtctttggtgaccccagagat
gatagcgggggcatttctaatcctggattcagcggtgctgggaccagtactgtcacgccc
accaccggcactcaagggacgggggccagtggcggtactgatggcgactactttggaatg
atattcggtagcggctcttcactaccccgacctcccacatctattagcttaatatttttg
tctcttctaattattctagctttgagcaccatcaccaacaatggtgccttgttatctttc
cccttattatcattatttaagtga
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