Populus nigra (Lombardy poplar): 133704647
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Entry
133704647 CDS
T10372
Name
(RefSeq) structural maintenance of chromosomes protein 5 isoform X1
KO
K22803
structural maintenance of chromosomes protein 5
Organism
pnz Populus nigra (Lombardy poplar)
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pnz03400
]
133704647
DNA repair and recombination proteins [BR:
pnz03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
SMC5-SMC6 complex
133704647
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Ortholog
Paralog
GFIT
Motif
Pfam:
SMC_N
AAA_21
AAA_23
AAA_15
AAA_29
AAA
ABC_tran
AAA_27
BORCS7
RNA_pol_Rpb5_C
Motif
Other DBs
NCBI-GeneID:
133704647
NCBI-ProteinID:
XP_061985525
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All DBs
Position
1:22712513..22727265
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AA seq
1057 aa
AA seq
DB search
MKRPSTREEPPSKRAKTSRGEDDYMPGNIIEIELRNFMTYDCLVCKPGSRLNLVIGPNGS
GKSSIVCAIALGLGGEPQLLGRATSIGAYVKRGEESGHIKISLRGSTKDEKITIIRRIDA
HNKSEWLFNGKVASKKEVTEIMQQFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAV
GDPQLPIQHRALVDKSRELKTIEMAVKRNGETLNQLKALNAELEKDVERVRQREVLLKKA
ESMKKKLPWLKYDAIKADYLKAKEAEKDVKQKLEEAAKTLNNLREPIEKQKLEKPQMDAK
CKRLSNLMKENAKRRMELLEKESSLGVQIRGKYKEMGDLKKEEETRQQRIIKAKEDLAIA
EAELRNLPVYEPPKDVLDKLRTQISDLKVSANQKRIQKQDKEKVLNQKNIALRHCVDRLK
DMENKNNKLLQALRNSGAEKIFEAYHWLREHRQELNKEVYGPVLLEVNVSNRDHADYLEG
HVPYYIWKSFITQDPHDRDFLVRNLKSFDVPILNYVRDKYRHKEPFFISNEMRELGIYSR
LDQVFEAPDAVKEVLISQFGLEHSYIGSKETDQKAAEVAKLRVLDFWTPENHYRWSVSRY
GGHVSGSVDPVDRSRLLLCGSDVGEIERLRCRKEELEEAVSALEEDLKLLMTEQRSIDEE
EAKLHKQREEIVSNVTLEMRKRREMENRVDQRKRKLESLLREDDQDAVMAKLIDEAANLN
TRRLQCAIDIKNLLVEAVNYKWNFAEKHMTSIEFDAKIRELEHGLKQPAKFAQQVACQLE
YCKKETEDHRQQLLAAKRHAESIAIITPELEKAFLEMPTTIEELEAAIQDTLSQANSTLS
LNQNVVEEYEHRQGKIEAITKKLEADKEELKKCLAEIDALKESWLPTLRSLVTQINETFS
HNFQEMAVAGEVSLDEHDNDFDQFGILIKVKFREAGQLQVLSAHHQSGGERSVSTILYLV
SLQDLTNCPFRVVDEINQGMDPSNERKMFQQLVRAASQPNTPQCFLLTPKLLPNLEYSEA
CSILNIMNGPWIEQPSKAWSSGECWGAVTGLLGESRC
NT seq
3174 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggccttcaactagggaggaacctccctcaaaacgcgccaaaacctccagagga
gaagatgattacatgcctggaaacataattgagattgaacttcgtaacttcatgacttat
gattgtttggtttgcaaacctggatcacgcctgaaccttgtaattggaccaaatgggtcg
ggtaagagctcaattgtgtgtgccattgcacttggacttggtggtgagcctcagttgctt
gggagggcaacgagtattggggcatatgtgaagcgcggggaggagtctgggcacatcaaa
atatccttgagaggaagtacaaaagatgagaagattaccataatccgcagaattgatgca
cataacaagtcagagtggttgttcaatggaaaagtggcatctaagaaagaggtcactgaa
atcatgcaacaattcaacatccaagtcaacaatttgactcaattcttgccacaagatagg
gtatgtgaatttgcaaagttaactcctgtgcaacttctagaagagactgaaaaggctgtc
ggtgatcctcaacttccaatccaacaccgtgctcttgttgacaaaagtcgtgaactgaag
accattgaaatggctgttaagaggaatggggaaacattgaatcagctgaaagctcttaat
gctgagcttgaaaaagacgtggagcgtgtcagacaaagggaagtgcttctaaagaaggct
gaatccatgaaaaagaaattgccatggctgaagtatgacgcgataaaggctgactatttg
aaagctaaagaggcagaaaaggacgtaaaacagaagctggaggaagctgcaaaaactttg
aataacttgagagaacctatcgaaaaacagaagcttgaaaaaccccaaatggatgctaaa
tgtaaaagattaagcaatctcatgaaggaaaatgctaagcgacgtatggagttactggag
aaggaaagcagtttgggggtgcaaattcgtggaaaatacaaggaaatgggagacttgaag
aaggaagaagaaacacgccaacaaagaatcataaaagctaaagaggatcttgcaattgct
gaagcagaacttcgaaatttgcctgtctatgaacctccaaaagatgtgcttgataaatta
cgcactcagatttctgatttaaaagtctctgcaaatcaaaaaagaattcagaagcaggac
aaggagaaagttttaaatcaaaagaacatagcactgaggcattgtgttgacaggctgaag
gatatggaaaataaaaacaataagctcttacaagcattaagaaattctggagctgaaaag
atatttgaggcttatcattggctgcgagaacatcgtcaggaattgaataaggaagtctat
gggcctgttttgcttgaggttaatgtctctaatcgggatcatgctgactacttggaaggt
catgtcccatattatatctggaagtctttcataacccaggatcctcatgaccgggacttt
ttggtaagaaacctgaagtcatttgatgtgccgattttaaactacgtgagggataaatat
cgtcataaggagccttttttcatttccaatgagatgcgtgagcttggcatctattcacgg
ctcgaccaagtttttgaagctcctgatgctgttaaggaggttttgatcagccagtttggg
ctggaacattcttatattgggtcaaaggaaactgatcagaaggctgctgaggtggcaaag
ttgcgagttttagatttttggactcctgaaaatcactaccggtggtctgtttccagatat
ggtggtcatgtatcaggaagtgttgatccagttgatcgctcacgtcttcttctctgtggt
tcagatgttggggaaattgaaaggctgagatgcaggaaagaggagctggaagaagctgtt
agtgctttagaggaggatttaaaattgctgatgaccgagcaaagatccatagatgaagaa
gaggctaaacttcataaacagcgggaggagattgtcagcaatgtgacactggagatgcga
aaacggcgtgaaatggagaaccgtgttgatcaaaggaaaaggaaactagagtcattgctg
agggaggatgaccaggatgctgttatggcaaaactgattgatgaggctgcaaaccttaac
actcggcggttgcaatgtgcaattgatattaagaatttactcgtcgaggctgttaattac
aaatggaattttgctgaaaaacatatgacctccattgagtttgatgcgaagattagagaa
ctggaacacggtctgaagcagcctgcaaaatttgctcaacaagtagcatgccaattggag
tattgcaagaaggaaacagaggatcatcgacagcaactcttggctgctaaaagacatgca
gaatcaattgctatcatcactccagaacttgagaaggcttttcttgagatgccaacgact
attgaggaattggaggctgctattcaagatactttgtctcaagccaattccactctttcc
ctgaaccagaatgtggtggaagaatatgaacaccgtcagggaaagatagaagccattacc
aaaaaacttgaagccgataaggaagaactaaaaaagtgtttagctgaaatagatgccttg
aaggagagttggcttccaactttgagaagccttgttactcagattaatgaaactttcagc
cataacttccaggagatggcagttgcaggagaagtttcattggatgagcatgacaatgac
tttgatcaatttggaatattgataaaagtgaagttcagagaagccggacaacttcaagtt
cttagtgctcatcatcaatctggaggggagcgttcagtttcaaccattctgtatcttgtt
tctcttcaagacctcacaaactgcccgtttagggtagttgatgagataaatcaaggaatg
gacccctcaaacgaaagaaagatgtttcagcaactagtgagagctgcaagccagccaaac
acaccacagtgtttcttactcaccccaaagttgctacctaatttggaatacagcgaggca
tgtagcattcttaatataatgaatggaccttggattgagcagccttccaaagcatggagc
agtggagaatgttggggggctgtcacagggcttttgggagaaagtcgatgctga
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