Populus nigra (Lombardy poplar): 133705227
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Entry
133705227 CDS
T10372
Name
(RefSeq) protein RDM16-like
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133705227
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pnz03041
]
133705227
Spliceosome [BR:
pnz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
133705227
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Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
Motif
Other DBs
NCBI-GeneID:
133705227
NCBI-ProteinID:
XP_061986340
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Position
10:13768877..13775945
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AA seq
848 aa
AA seq
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MDRSFKHTRDDRDRDHHKHRSRDDKHRDSSDSHHHRSERESHQREHHKSSRRDDTKRERS
HEREESVDRRERSHDHKSSSSSRREERERSYDAREEREGSRERKREKRERETVDEDYLER
KKRKERGGSEDRAVVEKEKRSRRRFGEKVKEEDNRTDNNDNGNSFENVKRVDSSEAGVKE
EVNDEPIGGGRGSTTENGGVKTTNGASLESFTKTPSNQPETSVAPVHPLPTKVSSISNTN
ENKGVSIARSHAVPGKSSTDGTSSAAGKSGNLSLDALAKAKKALQMQKELSEKLKKLPLS
SKGNNTSSGGSSQRVLPSATTTTAVSTGAVSSSSSLSTSTLVSIKTPSTGVAPLPDITSI
PNYEAVKRAQELAAKMGFRQDPEFAPLINLFPGQLPAEVSVPQKPTKTPVLRVDALGREI
DEHGNVVNVTKPSNLSTLKVNINKQKKEAFQILKPELDVDPESNPYYDVKMGINKNKFLR
PKRMTFQFVEEGKWLKEAEIMKLRNQFGEEREKDMKARQALHAKAKAAPDINPNLIEVSE
RVITKAKPKDPIPDVEWWDAPLLTGGTYGENDDVLITEHRLKRDKITIYVQHPRPIEPPA
EPAPPPPQPLKLTKKEQKKLRTQRRLAREKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSE
ATQDPTRLEKQIRTAAAEREQAHIDRNTARKLTPAERREKKERKLFDDPNTMETNVSIYR
INNLSDKKTRFKVDVNAHENRLTGCTVITEGICVVVVEGGSKSIKRYGKLMLRRINWAEA
VNEDEGDDNEEKPVNKCMLVWQGSVAKPSFHRFSLHDCVTEAAARKYLADAGVAHYWDLA
VNFSDDQM
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atggaccgctccttcaaacacacccgtgacgaccgtgatcgtgaccaccacaaacatcga
tcaagagacgataagcatcgagactcctccgattctcaccaccaccgatcagagagagaa
tctcaccaacgcgagcatcacaaatcatccaggcgcgatgatacaaagcgcgaaagatct
cacgaacgagaagagagtgtggataggcgagagagatctcacgatcacaaatcgtcttcc
tcatcgaggcgtgaggagagagagaggtcatatgatgcgagagaggagagagaagggagt
agagagagaaaacgcgagaagagagaaagagagactgtagatgaagattatttggagaga
aagaaaagaaaggagagaggaggtagtgaagatagggctgttgttgagaaggagaagagg
agtagaagaagatttggtgaaaaagtgaaagaagaggataataggactgacaacaatgat
aatggtaatagttttgagaatgtgaaaagggtggattcgagtgaggctggagtgaaggag
gaagtcaatgatgagccaattggtggcggcaggggcagcaccacagaaaacggtggtgtt
aagactacaaatggtgcttctctggaatcattcactaagactccaagcaatcagcctgag
acctctgtggcacctgttcacccccttcctaccaaggtatcttcaatttcaaacacaaat
gaaaataagggagttagtattgccagatctcatgcggttcctggaaaatctagtacagat
gggacatcttcagctgctgggaaaagtggaaatctatcacttgatgcattagcaaaagct
aagaaagccttgcaaatgcagaaggaactgtcagagaagctgaagaagctacccctgtcg
agcaagggtaataacacaagttcaggtggtagctcacaaagggtattgccatcagcaacc
accactactgctgtttcgactggggcagtttctagttcatcctccttatctacaagcact
ctggtgtctataaagacaccttcaactggtgtggcacctctgcccgatattactagcata
cccaattatgaagctgttaagcgtgcccaggaacttgctgctaaaatgggatttcgccag
gaccctgagtttgctcctcttataaacttattccctggccagttgccagcagaagtctct
gtgccacagaagcctactaagacccctgttcttcgtgtggatgcacttggtagggaaata
gatgaacatggaaatgtggtgaatgtgactaaaccaagcaaccttagcaccttaaaggtc
aacatcaacaagcagaaaaaggaagcattccagattcttaaacctgaattagatgtggat
cctgaatcgaacccttattatgatgtgaaaatgggaattaataagaataagttcttgaga
cccaaacgaatgaccttccagtttgtagaggaaggcaagtggttaaaagaagctgaaata
atgaaactgaggaatcaatttggagaagaaagagaaaaggatatgaaggcaaggcaagca
ttacatgcaaaggcgaaggcagctccggatataaatcctaatttgatagaggtatcagag
cgagttataaccaaagcgaagcctaaggatccgattcccgatgtagagtggtgggatgct
cctttactgactggtgggacttatggtgaaaatgatgatgttcttatcactgagcataga
ttgaaaagggataaaattactatctatgtgcaacacccacgtcctattgagcccccggct
gagccagctcctccaccgcctcaacctttgaaactaactaaaaaggagcagaagaagctc
agaacacagcgtcgacttgctcgggaaaaggatagacaggagatgattagacaaggcttg
attgaacctccaaaaccaaaggttaagatgagcaatttaatgaaagttcttggctcagaa
gcaacacaagatcccaccagacttgaaaagcaaattcgtactgcagctgctgaacgtgaa
caagctcatattgatcgaaatactgcacgtaagctcactcctgctgagcgccgtgaaaag
aaggagagaaagctctttgatgacccgaacaccatggaaactaatgtttctatttacaga
atcaacaacctctcagacaagaaaactcgcttcaaagttgatgtcaatgctcacgagaac
cgcttgactgggtgcacggtgattacagagggaatttgtgtggtggtggttgaaggggga
agcaaatccatcaaaaggtatgggaagctaatgcttaggcgtataaactgggctgaagct
gttaatgaggatgaaggagatgacaatgaggagaaacctgtgaacaaatgcatgctggtg
tggcaaggtagtgttgccaaacctagcttccacaggttttctttacatgactgtgtgact
gaagctgcagcccgaaaatatttagctgatgctggtgttgcccactattgggatcttgct
gtcaatttctctgacgatcaaatgtga
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