Populus nigra (Lombardy poplar): 133705297
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Entry
133705297 CDS
T10372
Name
(RefSeq) phytochrome B isoform X1
KO
K12121
phytochrome B
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
133705297
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Ortholog
Paralog
GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HATPase_c
HisKA
PAS_9
PAS_4
PAS_8
PAS_3
Motif
Other DBs
NCBI-GeneID:
133705297
NCBI-ProteinID:
XP_061986415
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Position
10:9847119..9855299
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AA seq
1140 aa
AA seq
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MASQSQRQSNQRQHQNQAAQSSGTSNMRQHHHATESVSKAIAQYTVDAQLHAVFEQSGGS
GKSFDYSQSVRTTSQSVPEEQITAYLSKIQRGGHIQPFGCMIAVDEGSFRVIAYSENAKE
MLGLTPQSVPSLDKQEILSDGTDVRTLFRPSSSAMLEKAFGAREITLLNPIWIHSKNSGK
PFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRSISQLQSLPGGDIKLLCDT
VVESVRELTGYDRVMVYKFHEDEHGEVVAENKRADLEPYIGLHYPSTDIPQASRFLFKQN
RVRMIVDCHATPVCVIQDEALMQPLCLVGSTLRAPHGCHAQYMANMGSIASLAMAVIING
NEEEAIGGRNSTRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLSEK
HVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKDI
VEWLLALHGDSTGLSTDSLADAGYPGAASLGNAVCGMAVAYITKRDFLFWFRSHTAKEIK
WGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLLWENAEMDAIHSLQLILRDSFRDAE
ATNSKAVVHAQLEDTELQGMDELSSVAREMVRLIETATAPIFAVDVDGCINGWNAKVAEL
TGLSVDKAMGKSLVHDLVYKEYEETVDKLLHRALRGEEDKNVEIKLRTFGSEHQKKALFV
VVNACSSKDYMNNIVGVCFVGQDVTGQKVVMDKYVHIQGDYKAIVHSPNPLIPPIFASDE
NTCCLEWNTAMEKFTGWSRGEVIGKMLVGEVFGSFCQLKGSDALTKFMIALHNAIGGQDT
DKLPFSFFDRNGKYVQALLTANKRVNMEGEIVGAFCFLQIASNELQQALKVQRQQEKKCS
ARMKELAYICQEIRNPLSGLRFTNSLLENTDLTEDQKQFLETSAACEKQILKITRDVDLE
SIENGLLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLVVYGDQARIQQ
VLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHMEFKIVCPGEGLPPELVQDMF
HSSKWVTQEGLGLSMCRKILKLMNGEVQYIRESERCYFLVILEVPMPNSVRGITVKSAAD
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atggcatcacaatcacaaagacaaagcaaccagcggcagcaccagaatcaagcggcgcag
tcttctggtaccagtaacatgaggcaacatcatcacgccacagaatcagtaagcaaagca
attgcacaatacactgtcgatgcacaactccatgcagtttttgaacaatctggcgggtct
ggtaagtcgtttgattattcacagtcagtcagaactactagtcagtcagtacccgaggaa
caaatcactgcttatttatcaaaaatccaaaggggtggtcatatccagccatttgggtgc
atgattgctgtagatgaagggtcgtttagggtcattgcatatagcgaaaatgccaaagaa
atgcttggtttaactccacagtcggtcccttctctagataaacaggaaattctctctgat
gggactgatgtaaggactctttttaggccttcgagctccgctatgcttgaaaaagcattt
ggtgcaagggaaataactttgttgaatccaatttggatccattccaagaattccgggaag
cctttttacgcaattttgcataggattgatgttggtattgttattgatttagagcctgct
aggactgaagaccctgctttatccatagcaggggctgtacagtctcagaaattagcagtt
cgttcgatttcacaattacaatcacttcctggtggggatattaagttattgtgtgatact
gtagtggagagtgtcagagagcttaccgggtatgatagagttatggtttataagtttcat
gaagatgagcatggtgaggttgtggctgagaataaaagggctgatttggaaccttatatt
ggtttgcattatccttctacggatataccacaagcttcaaggtttctgttcaagcagaat
agggttaggatgattgtggattgccatgctacacctgtctgtgttatccaggatgaggcg
cttatgcagcctttatgcttggttggttcaactcttcgagctcctcatggttgtcatgct
cagtatatggcgaatatggggtcaattgcttcattggccatggctgttattattaatgga
aatgaggaagaagctattggtgggaggaattcaacgaggctttggggtttggttgtttgc
catcacacttctgctaggtgtattccatttccgcttcgttatgcatgtgagtttttaatg
caggcttttggacttcaattgaacatggaattgcagttagcgtcacagttgtcagagaaa
catgtcttgaggactcagactctcttgtgtgatatgcttctccgtgactctcctactggc
attgtcactcaaagtccaagtatcatggatcttgtgaagtgtgacggggcagctctttat
taccaaggacagtattacccattgggcgtgaccccaaccgaagcccaaataaaagatatt
gtggagtggttgttggcccttcacggagactcaactggtttaagcacagacagtttagct
gatgctgggtatcctggggcagcctcacttggcaatgcagtttgtggaatggctgttgct
tatattactaagagagattttcttttctggtttcggtctcacactgcaaaggagatcaaa
tggggtggtgcgaagcatcacccagaggacaaggatgatgggcagaggatgcatccacgt
tcttcattcaaggcatttttggaggtggtgaagagccggagtttactgtgggagaatgca
gaaatggatgccattcattctttgcagcttattttgcgagactcatttagggacgctgaa
gcaaccaattctaaggcagttgtacatgcccagctcgaggatacagaattgcaagggatg
gatgagctcagttcggtcgcaagagaaatggtgagactaatagagactgctactgctccg
atatttgctgtagatgttgatggctgcataaatgggtggaatgcaaaggtcgctgagttg
actgggctctcagttgacaaagccatggggaagtctttggttcacgatcttgtttataag
gaatatgaagaaacagttgacaaactccttcatcgtgctttaagaggtgaagaggataag
aacgtggagataaaattgaggacatttggctctgaacaccaaaaaaaggccctttttgtg
gtggtaaatgcttgttctagcaaggattacatgaataatatagttggagtctgctttgtc
ggtcaggatgttacaggtcaaaaggtggtaatggacaaatatgtccatatacaaggtgat
tataaggctattgtacacagccccaatcctttgatccctcctatatttgcttcagatgaa
aacacatgttgcttggagtggaacactgccatggaaaaattcacggggtggtcccggggg
gaagttattgggaagatgttggttggggaggtttttggcagtttctgtcagctcaagggt
tcagatgcactgacaaaattcatgattgctttgcacaatgcaattggagggcaagataca
gacaagctaccattttcattttttgaccggaatggaaagtatgtgcaagctctcttgaca
gcgaacaagagggtaaatatggagggggagattgttggagccttctgcttcttgcagatt
gcaagtaatgagttgcagcaagctttgaaagtccagagacagcaggaaaagaagtgctct
gcaaggatgaaagagttggcttacatctgccaggaaataaggaatcctttaagtggtcta
cgctttaccaactcgcttttggagaacacggacttgactgaagatcaaaagcagtttctt
gagactagtgctgcttgtgaaaagcagatattgaagatcactcgagatgttgatcttgag
agcatcgaaaatggtttactggagcttgagaaggctgaattcttactcgggagtgtcata
aatgctgttgttagccaagcaatgctattgctgagggaaagaaatctgcaattgcttcgt
gatattccagaagaaataaaaacgctggtggtttatggtgatcaggcaagaattcaacaa
gtactggctgatttcttgttgaatatggtgcgttatgctccatcttcagcaggttgggta
gagattcatgtttgtccaacactgaagcaaatctctgatgggcacactctcgtgcatatg
gagttcaagattgtttgcccgggtgaaggtcttcctcctgaattagttcaagacatgttc
catagtagtaaatgggttactcaagagggcctagggctcagcatgtgcaggaagatttta
aagctaatgaatggtgaggtccaatatattagagagtcagaaagatgctatttcttagtt
atcctcgaagtacccatgcctaatagtgtgagaggtataactgtaaaaagtgctgcagac
tag
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