Populus nigra (Lombardy poplar): 133705377
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Entry
133705377 CDS
T10372
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
pnz Populus nigra (Lombardy poplar)
Brite
Enzymes [BR:
pnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
133705377
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
133705377
Chromosome and associated proteins [BR:
pnz03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
133705377
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133705377
NCBI-ProteinID:
XP_061986514
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Position
10:5971792..5976572
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AA seq
894 aa
AA seq
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MGTIDDKWGDECSVIGDKGEIEYIDYQNDKSVCSYDPSEEGPIVISAPFPFEEGKPRSVF
VGETAIDSITINNTTAEAVDLWTKIYASTPEDSFKLSLMKPPSANDVKCQEGFMDFSVME
DRMLQPGESLTIWLSCKPKELGLYTTVVHFDVGNDRVERVAFLLADDNISQSLASKKPFS
RGQRKKKFSTDTFVSAGSRPARAPGRAYKNRLPRYDIPNDIRALIERKQIPDVIMGGLTI
DNYASYFKTLLIMEEIQLEEDMRSHDMECVTMRRKGNYLSLVVPGLAERRPSLVQGDDIF
VKLADADDTTTPYQGYIYRVEADEVYLKFDQEFHLCHNDGHLYNVHFKYNRVSMRRLYQA
IDAAKDLETEMLFPSEASGSRLIETSTLVPISCSLNEEQICSVEMILGCKGGPPYVIYGP
PGTGKTMTIIEAILQLYQNRKHARILVCAPSNSAADHLLEKLLSEEAVHIQEKEIFRLNA
TSRPFDDIKPDLIRFCLFDEHIFTCPPLGALTRYRIIISTYMSASLLNAEGVKRGQFSHI
FLDEAGQASEPESMISVSNFCNRDTVVVLAGDPMQLGPVIFSKDAESYGLGKSYLERLFE
CESYDSGDENYVTKLIRNYRCHPEILHLPSTLFYEGELIACKESNDDSTSLMTLTNLLPG
KNFPVLFFGIQGCDEREANNPSWFNRIEASKVVEIVKKLATRGNLSDSDIGVITPYRQQV
LKLKKALENIDMSDIKVGSVEQFQGQERKVIIVSTVRSTIKHNDFDRVHCLGFLSNPRRF
NVAITRAISLLIITGNPHIISKDQYWNKLLWHCVDHDSYQGCALPEKRLECVDNYPTYED
RVNYDGGPVTNEADWCDGWQPSSSGEVGWDHPGSSQAEIPEPVTDEAEWSDGWQ
NT seq
2685 nt
NT seq
+upstream
nt +downstream
nt
atgggcacaattgatgataagtggggtgacgagtgctctgtcattggagacaagggtgaa
attgagtatatcgattatcaaaatgacaaatctgtgtgtagttatgatcccagtgaagag
ggtcctattgtcatttctgccccatttccttttgaagaggggaagccccgatcagtgttt
gttggggaaactgctattgattcaattactattaataacaccaccgctgaagctgttgat
ttatggaccaaaatttatgcctcaactcctgaggattcttttaagctttcattgatgaaa
cctccatcagctaatgatgttaagtgccaagaaggcttcatggatttttcagtaatggag
gatcgaatgcttcagcctggcgagtcgttaaccatttggttatcctgcaaaccaaaggaa
cttggcttgtacactactgtggtgcattttgatgttggcaatgatagggtagaacgagtg
gcctttttgttggctgatgataatatatctcagtctttggcttccaaaaagcctttctca
agaggccaaaggaagaaaaaattctccacagatacctttgtttctgcgggatcacgtcca
gcaagggcaccaggtcgagcgtacaaaaacaggcttcctcgttatgatattcctaacgat
attagagcattgattgagagaaagcagatccctgatgttatcatgggaggtctaacgata
gacaattatgcttcctacttcaaaacactgttgatcatggaagaaatacaacttgaggaa
gacatgaggagtcatgacatggagtgtgttacgatgaggaggaaggggaattatctctcc
cttgtggtcccagggcttgcggaacggaggccctcccttgttcagggggatgatattttt
gtaaagcttgcagatgcagatgacacaacaactccatatcagggctatatttaccgggtc
gaggctgatgaagtgtacttgaaatttgaccaagaatttcacttgtgccataatgatgga
catctttacaatgtgcacttcaaatataatcgagtcagtatgagaagactgtatcaggcc
attgatgctgcaaaggatttagagacagagatgctatttccatcagaggcctctggaagt
aggctcattgaaacttctactctggtgcctatatcttgtagtcttaatgaggagcagatc
tgttcagtggagatgatccttggctgcaaaggaggcccaccttacgtgatttatgggcct
ccaggtacaggcaaaaccatgacaattatagaagcaattctccagctttatcaaaacaga
aagcatgctcggattcttgtctgtgcaccttcaaatagcgcagcagatcacctgttagag
aagcttctcagtgaggaggctgttcacattcaagagaaagaaatattcaggctcaatgca
acatcccgtccattcgacgacatcaagcccgatcttattcgtttttgtttatttgatgag
catatcttcacctgtcctccactcggtgctcttactcgttatagaatcatcatatcaact
tatatgagtgcctctcttctcaatgctgagggtgtcaagcgaggacagttctctcatatt
ttcttggatgaggctggccaggcttcagaacctgaaagcatgatttctgtatcgaacttc
tgcaacagggatacagttgttgttcttgctggagaccccatgcaattgggcccagtaata
ttctccaaagacgcagagagttatggactggggaaatcgtacttggagaggctctttgag
tgtgaatcttatgacagtggagatgaaaattatgtgacaaaactgataagaaactacaga
tgtcacccagagattctgcatcttccttcaactttgttctatgagggagaattgatagcc
tgcaaagagtccaatgatgattcaacttccttgatgactttgacaaaccttcttccagga
aagaactttcctgttctcttctttggcatccagggctgtgatgagagggaggcaaataac
ccatcgtggtttaatcgaatcgaagcaagcaaggtagtggagattgtaaagaaactggct
actaggggtaacctgagcgacagtgacattggggtcatcacaccttataggcagcaagta
ctcaaactaaagaaggcactggaaaacatagacatgtctgacattaaagttgggagtgta
gaacaatttcaaggacaagaaaggaaggttatcattgtatctactgtccgatcaacaatc
aaacacaatgattttgacagggtccactgtttgggattcttaagcaacccgagaaggttt
aatgtagccattactcgtgctatatctctgcttattattaccgggaacccacacattatt
agtaaggaccaatactggaataaacttctatggcactgtgtagatcatgactcctatcag
ggttgtgctctcccagaaaaaagactggagtgtgttgacaactatccaacatatgaggat
cgtgtcaactatgatggagggcctgtgacaaatgaagctgattggtgtgatggttggcaa
ccttcatcctctggagaagtaggatgggatcatccagggtcatctcaagcagaaattcca
gaacccgtgacagatgaagctgaatggtctgatggttggcagtaa
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