Populus nigra (Lombardy poplar): 133705387
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Entry
133705387 CDS
T10372
Name
(RefSeq) SNF2 domain-containing protein CLASSY 2-like isoform X1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
133705387
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pnz03400
]
133705387
DNA repair and recombination proteins [BR:
pnz03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
133705387
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
TCTP
Motif
Other DBs
NCBI-GeneID:
133705387
NCBI-ProteinID:
XP_061986536
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All DBs
Position
10:11961202..11968821
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AA seq
1328 aa
AA seq
DB search
MKRKRLHQSKHPFNAHPFEALCCGSWQSVELIQIRYGAMTVHFVDSHHRIEEKGPFSNVR
VKSRKATSSDCTCFLRPGIDVCVLSSSERAKNTGEGNSEPVWVDAKISSIKRKPHVSHCS
CQFFVNLYVNQGPLGSERARLSKETEAVGINEISVLQKLDNDPCEADNNQQEAQFYRWEF
CEDCSLVQRSKLFLGRFSADLTWLLVASVLKQVEFDVRSVQNKIVYQILGGENEHCSLKS
NNHINCVTFKVKDSISTPFVVQLVPTDACSEAGHISDTNGTEQSPCYDVMSLRRSKRRNV
QPERFLACDAPAETEIGWVRSLPYTPLKWKAEEEEEEEMHLPLAYLFGTHAGASCAEEQT
CNEVGVSSRKLELLEGIPVSRTKTYLKEIKSNVVNRRDHQTEPGEVRAGMAKRRECQKST
MADRIEHQTRLGDAESGMANRKKHGTQIREVKSGVANRREHQDQLAIVPVHAEDVLATFE
QFDSPEKTPEPYSQAFIEFPISYYRKKSSPAAHRKNDRDGDLMFGNGWGGKFSTKKVQRA
RYRSTHVKQDDSCAPMTYKRTALSAGAYNKLISSYMKNIDATIKSKEVPRIIDQWEEFKA
KHSSDQKEKMEPSSVKDDGESSETEMLWREMELCLASAYILEDNEALLSTQTTQKNCQHE
FKLDEEIGILCQICGFVKTEIKYVSAPFMEHTGWTAESKPQNEEDSELKPDEDEGSSLFG
NHTSGEDVPVSEVNDNVWDLIPELRPKLHMHQKKAFEFLWKNTAGSLVPAHMEKTSKKIG
GCVVSHTPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEIPVPVHLI
HGTRSSRVFKQTPAALRGSGPRPSQDVVHILDCLEKMQKWHAQPSVLVMGYTSFLTLMRE
DSKYNHRKYMAKVLRESPGMLILDEGHNPRSTKSRLRKVLMKVETDLRILLSGTLFQNNF
CEYFNTLTLARPMFIKEVLKALDPKFKRKKKGAQKARHLLESRARKFFIDNIASKINSDE
AEEKMQGLNMLRNMTNGFIDVYEGTASDTLPGIQIYTILMNPTDIQHQILVKLHKIMEKC
PGYPLEVELLITLASIHPSLVNSSVCVKKFYNLEELMELEKLRFDCKKGSKVMFVLNLVY
RVVKNEKVLIFCHNIAPIKLFLELFENIFRWQQGKEILVLTGELELFERGRVMDKFEELG
GPSRVLLASITACAEGISLTAASRVILLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLA
TGTVEEDKYRRTAWKEWVSRMIFSEEFVEDPSRWQAEKIEDDVLREIVEEDRVKSFHMIM
KNEKASTS
NT seq
3987 nt
NT seq
+upstream
nt +downstream
nt
atgaagagaaagcgtttacatcagtccaagcatccatttaatgcacacccttttgaggct
ttatgctgtggctcttggcaaagcgtggagcttatacaaatcaggtatggggctatgact
gtgcattttgtagatagccatcatagaattgaggagaagggtcctttctcaaacgttcga
gtgaagtcgaggaaagctacctcatctgattgcacatgctttctgaggcctggtattgat
gtttgtgtgctttcatcttctgagcgcgcgaagaatactggggaaggaaattcagaacct
gtgtgggttgatgctaagataagttctatcaagcggaaacctcatgtatctcactgctca
tgtcaattttttgttaacctctatgttaaccaaggccctcttggttcagagagagccaga
cttagtaaagaaactgaagcagtaggaatcaatgaaatttctgttcttcagaaacttgac
aacgatccatgtgaagcagacaacaatcagcaagaagctcagttctatcgttgggaattt
tgtgaggactgttctttagtacaaagaagcaaactctttttggggaggttttcagctgac
cttacatggctgcttgtagcatcagttctgaagcaagttgaatttgatgtaaggtcagtc
caaaataaaattgtctaccaaattttgggtggtgagaatgagcactgttcattaaaatct
aataatcacataaattgtgtaactttcaaagtgaaagacagtatttcaaccccatttgtg
gtccaattggttcccactgatgcttgtagtgaagcaggccatattagtgacaccaatggg
accgaacaatcaccatgctatgatgttatgagtttgcggcggtcaaagcgtcgaaatgta
caacctgagcgcttccttgcctgtgatgctcctgcagagacagaaattggctgggtaaga
tccctgccatacacaccactgaagtggaaggcagaagaagaagaagaagaagaaatgcac
ttaccactggcatacctgtttgggacacatgcaggtgcaagttgtgcagaagagcaaaca
tgcaatgaagtgggagttagttctcgtaaactagaactcttggaaggtatccctgtttcc
agaaccaagacttacttgaaggagattaaatcaaatgtggttaacagaagagatcaccaa
actgagcccggggaggttcgagcaggcatggctaagagaagagaatgccaaaagtcaacc
atggctgaccgaatagaacaccaaactcgactcggggatgctgaatcaggcatggccaac
agaaaaaagcatggaactcaaattagggaggttaaatcaggcgtggctaacagaagagaa
caccaagatcaacttgctattgttcctgtgcatgctgaagatgttctggcaacctttgaa
caatttgattcccctgagaagactcctgaaccttattcacaagcgtttattgaatttccg
attagttattacagaaaaaagagttctcctgctgcgcacaggaagaatgatcgtgatgga
gatttgatgtttggaaatggatggggtggaaaattttctactaagaaagttcaaagagca
agataccgatccacacatgtaaagcaggatgattcttgtgcgccaatgacttacaagcgg
acagccttaagtgctggtgcgtacaataaactcataagttcttatatgaagaacattgat
gccacaatcaagtcaaaggaggttccacgcattattgaccagtgggaagagtttaaagca
aaacatagctcagatcagaaggagaaaatggaaccatcttcggttaaggatgatggagaa
agctcagaaactgaaatgttgtggagagagatggaactatgcctggcatcagcatatata
cttgaagataatgaggctctactttccactcagactacacagaaaaattgccagcacgaa
ttcaaactggatgaagaaattgggatattatgccaaatatgcggctttgtgaaaactgaa
ataaaatatgtttcagcaccatttatggaacacacaggctggactgcagaaagtaagcca
cagaatgaagaggattcggagcttaaacctgatgaagatgagggctcgagtctttttggc
aatcatacctcaggtgaagatgtgcctgtatcagaagtgaatgacaatgtttgggacttg
atccctgagctcagaccgaaattacacatgcatcagaaaaaggcttttgagtttctatgg
aagaacactgctggatccttggtaccggcacatatggaaaaaacatctaagaagataggt
ggttgtgttgtttctcatactcctggagctggaaaaacatttctcatcattgcattcctt
gtcagttacttgaagttgtttccaggaaaacggcctctggtccttgctccaaagacaact
ctctatacctggtacaaggaatttatcaagtgggaaatccctgttccagttcatcttatc
catggcaccagatcttctagagtcttcaagcagactccagcagcgcttcgaggatcaggt
ccaaggcccagccaggatgttgtgcatattttggattgcctggagaaaatgcaaaagtgg
catgcacaaccaagtgtgcttgtaatgggctatacctcatttttgacattgatgagagaa
gactcgaagtacaaccacagaaaatatatggctaaagtgctgcgagagagtcctggaatg
ttgatacttgatgaaggacacaaccccaggagtacaaaatcaaggttgagaaaggttttg
atgaaagtggaaacagatctgagaatattgctttcaggtactttgtttcagaataatttt
tgtgaatatttcaacacccttaccctggcaagaccaatgtttatcaaagaagttctgaag
gcattagacccgaagtttaagaggaaaaagaaaggggcacaaaaagcacgtcatttgctg
gaatctcgcgccagaaaattcttcatagataacattgcaagcaaaattaattcggatgag
gctgaagagaaaatgcagggtttgaatatgctgagaaacatgactaatgggttcattgac
gtgtatgaaggcacagcttctgacacccttcctggtatacagatttacaccatattgatg
aatccaacagatattcaacatcagattttggtgaaactccataaaataatggaaaaatgc
cctggataccccctggaagtagagcttttgataactcttgcttcaatacatccttcattg
gtcaattcttctgtctgtgttaaaaaattttataatctggaggaactgatggaacttgag
aagttaagatttgattgtaagaaagggtccaaggtgatgtttgtgttgaatcttgtgtat
cgtgtagtcaagaacgagaaggttctgatcttttgccacaacattgcacccattaaatta
ttccttgaattgtttgagaatatctttagatggcagcagggtaaagaaattctggttctt
acaggggaactagagctgtttgaacgaggaagagtgatggataagtttgaggaattggga
gggccttcaagggttctacttgcatcaattacagcttgtgccgagggaataagtttgaca
gcagcttcacgggtaattcttttggactcggagtggaatccttccaagacaaagcaggcc
attgcacgagcttttcggcctggccaacagaagatggtttatgtgtatcagcttctggca
acaggcacagttgaagaggacaagtatcgtaggacagcatggaaggaatgggtctcacgc
atgatatttagtgaggaatttgtggaggacccttctcgatggcaagcagaaaagattgag
gacgatgtattacgggagatagtagaggaggaccgggttaagtcattccatatgataatg
aagaacgagaaggcttcaacaagttga
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