Populus nigra (Lombardy poplar): 133705449
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Entry
133705449 CDS
T10372
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133705449
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133705449
03012 Translation factors [BR:
pnz03012
]
133705449
Enzymes [BR:
pnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133705449
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
133705449
Translation factors [BR:
pnz03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
133705449
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
ATPase
T2SSE
AAA_16
AAA_19
ABC_tran
PhoH
AAA_23
Myosin_head
Motif
Other DBs
NCBI-GeneID:
133705449
NCBI-ProteinID:
XP_061986644
LinkDB
All DBs
Position
10:complement(16018188..16027617)
Genome browser
AA seq
1154 aa
AA seq
DB search
MQNSKLVLRSFLLGCSTTAKKKSFSYTIFSNKNNHPLFSLLLILHNSNETSFLVTKRRGF
CGYAAEQFSDDEYECDFENHKASSSVANVDEWKWKLSLLLRSETDQEIVSRDRKDRRDYE
QISNLAGRMGLYSELYGKVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLLQEH
LDRTQLSAGKVGGNADDASINQIENTSPDENPDSFLDRSVMERVLQRRSLRMRNMQRAWR
ESPEGRKMMDFRKSLPAFQEKEKLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESG
RGAFCSIICTQPRRISAMAVADRVSAERGEPLGEAVGYKVRLEGVKGRNTHLLFCTSGIL
LRRLLSDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLSRRQDLRLILMSATLNAELFS
NYFGGAPTIHIPGFTYPVRAQFLEDVLEMTGYKLTSFNQIDDYGQEKMWKTQRQLAPRKR
KNQITTLVEDALNNSSFDNYSSRARDSLARWMPDCIGFNLIEAVLCHICRKERPGAVLVF
MTGWEDISCLRDQLKAHPLLGDPNRILLLTCHGSMATSEQKLIFEKPPLNVRKIVLATNM
AEASITINDVVFVIDCGKAKETTYDALNNTPCLLPSWISKASARQRRGRAGRVQPGECYH
LYPRCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPKPLAVQNAIDF
LKMIGALDEKENLTNLGKYLTMLPVDPKLGKMLIMGAIFRCFGPILTIVSGLSVRDPFLL
PQDKKDLAGAAKSRFSAKDYSDHMALVRAYEGWKEAEREGSAYEYCWRNFLSAQTLQAIH
SLRKQFNFILKDAGLIEEDTNNHNKLSHNQSLVRAIICSGLYPGIASVVHRETSMSFKTM
DDGQVSLYANSVNARYETIPYPWLVFGEKVKVNSVFIRDSTGVSDSVLILFGGALACGAQ
AGHLKMLNGYIDFFMDHNLAECFLKLNEELDKLIQKKLQDPKLDILKEGKYLMLAVEDLV
SGDQCEGKFVFGRESRKPKVTNDNDRFTKDGANPKSLLQTLLMRAGHSPPKYKTKHLKTN
EFRALVEFKGMQFVGKPKRNKQQAERDAAIEALAWLTHTSDNNQNEHDDSQPDVTDNMLK
LLGKRRRSKQRRPG
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaattcgaagcttgtgctaagaagtttccttctgggatgcagcaccaccgctaag
aagaagtcgttttcctataccatcttcagcaataaaaacaaccaccctttatttagtttg
cttttgattctacataattctaatgaaaccagctttttagtgaccaaaaggcgtggtttt
tgtgggtatgcagcagagcagttctccgatgacgagtacgagtgtgattttgaaaaccac
aaggcttcttcgtctgtggccaatgttgatgagtggaaatggaagctcagcttgctattg
cgtagtgaaacagaccaagagattgtttctagagatagaaaagacaggagagactacgag
cagatttcaaatcttgctggaaggatgggactttatagtgaactatatggaaaagtggtt
gttgcaagcaaggttcctctacctaactacaggcctgatttggatgataagcggccacaa
agggaggtggttatccccctaagtttgcaaaggagggttgagggtttacttcaggagcat
cttgatagaactcaactaagtgctggaaaagttggtggtaatgcagatgatgcatccatc
aatcagattgaaaatacgagtccagatgagaatccagattcatttctagaccgctctgtg
atggaaagggttcttcagagaaggagtttgcgaatgcgtaacatgcaaagagcttggcgg
gaatcacctgagggcagaaaaatgatggactttaggaaatctctacctgctttccaggaa
aaggagaagttactccaagcaatagcaaggaatcaggtcattgtgatatctggagagact
ggatgtgggaaaaccactcaacttcctcaatatatactggagtcagaaatagaatctggg
cgtggagcattctgtagcataatttgcactcagcctcgaagaatatctgctatggctgtt
gcagatagagtgtctgcggagagaggagagcctcttggtgaagcagttggttataaagtc
cgactagagggtgtcaaaggaagaaacacacatctgcttttttgtaccagtggaatttta
cttcgacgcctgttaagtgaccgcaacttgaatggcataacccatgtttttgtggatgaa
attcatgagcgaggcatgaatgaagacttcctattgattgtgctcaaggatcttctttca
cgtcgtcaggacttgagattgattttaatgagtgccactttgaatgcggaactcttttcc
aattattttggaggagcaccaactattcatattccgggctttacatatccagtgagggca
caatttttagaagatgtactggaaatgaccggatataagttgacttctttcaatcaaatt
gatgattatggccaagagaaaatgtggaaaacacagaggcaactggcaccacgaaaaagg
aaaaaccagatcactactcttgttgaggatgctcttaataattcaagttttgacaattat
agttccagagcacgtgactctctggcacgctggatgcctgattgcataggatttaacctt
attgaagcagttttgtgccatatatgtcggaaggaacgaccaggtgctgtcttagtattc
atgactggctgggaagatattagctgtttgagggatcaacttaaagcacatcctctcctg
ggtgatcctaacagaattctgcttctaacttgccatggttctatggcaacctcagaacag
aaactgatttttgagaaaccacctcttaatgtacggaaaatagttcttgcaacaaatatg
gcagaggcaagtattacaatcaatgatgtagtttttgtcattgattgtgggaaggcaaaa
gaaaccacttatgatgctttaaacaacacaccttgtctgctaccttcttggatatcaaaa
gcatctgctcgacaaagaaggggtagggctggccgagtgcagccaggcgaatgttaccac
ctatacccaagatgtgtatatgaggcctttgccgaatatcaacttcctgaacttttgagg
actcccctgaactctctttgcttgcaaataaagagtttgcaggttggaagcataggagaa
ttcttgtcagctgctctccagccaccaaaaccattggctgtccaaaatgcgattgatttt
ctgaagatgattggtgcattagatgagaaggagaatctgacaaatcttgggaagtattta
acaatgcttccagtagatcccaagctgggtaaaatgttaataatgggtgctatctttcgg
tgctttggtcctatattaacaatagtgtccgggctcagtgtcagggatcctttccttctg
ccacaggacaaaaaggatttagctggggcagcaaagtctagattttctgcaaaagactac
agtgatcatatggctcttgtccgcgcatatgaaggatggaaagaagctgaaagagaagga
tcggcgtatgagtattgctggagaaatttcctgtctgcacaaactttgcaggccattcat
tctctaaggaagcaatttaacttcattttaaaagatgctggcttaatagaagaagataca
aacaaccacaacaaattaagtcacaaccaatcattggttcgtgcaattatatgctctggc
ctctatcctggaattgcgtcagtagtgcacagagaaacatccatgtctttcaaaacaatg
gatgatggccaagtttctctatatgctaattctgtgaatgcacgctatgaaacaattccc
tatccatggctggtctttggtgaaaaagtaaaggtcaactcagttttcatacgtgattcc
actggtgtatctgattccgtactgatcctttttggtggtgcacttgcttgtggagcacag
gctgggcatctgaaaatgttgaacggatacattgatttcttcatggatcataatttggca
gagtgctttttaaagcttaatgaagaacttgataagcttattcagaagaagcttcaagat
cctaaacttgacattctcaaggaaggaaaatacctcatgcttgctgttgaagacctggta
tcaggagatcaatgtgaaggaaaatttgtgtttggtcgtgaaagcaggaagcctaaggta
actaatgataatgacagatttacaaaagacggagcaaatccaaaaagtttgctacaaacc
ctactgatgagagctggacactcccctccaaaatacaagacaaagcaccttaagacgaat
gagtttagggcactggttgaattcaagggaatgcagtttgtggggaagcccaagagaaac
aagcaacaagcagagagggatgctgctattgaagcactggcctggttaacccatacatcc
gacaataatcaaaatgagcatgatgactcccaacctgatgtcactgataacatgctcaaa
cttcttgggaaacgtcgtagatcaaagcagcgtcgccctggttga
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