Populus nigra (Lombardy poplar): 133705541
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Entry
133705541 CDS
T10372
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133705541
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pnz03021
]
133705541
03041 Spliceosome [BR:
pnz03041
]
133705541
03036 Chromosome and associated proteins [BR:
pnz03036
]
133705541
Transcription machinery [BR:
pnz03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
133705541
Spliceosome [BR:
pnz03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
133705541
Complex B
133705541
Complex C
U2 SnRNP specific factors
133705541
Chromosome and associated proteins [BR:
pnz03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
133705541
TFTC complex
133705541
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
133705541
NCBI-ProteinID:
XP_061986788
LinkDB
All DBs
Position
10:13704095..13710418
Genome browser
AA seq
1213 aa
AA seq
DB search
MYLYSLTLQRATGIVSAINGNFSGGKAQEIVVARGKVLDLLRPDENGKLQTVLSVEIFGA
IRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKERNVFDKIHQETFGKSGCRRIVPGQYL
AVDPKGRAVMIGACEKQKLVYVLNRDTVARLTISSPLEAHKSHTICYSVCGVDCGFDNPI
FAAIELDYSEADQDSTGQAAGEAQKNLTFYELDLGLNHVSRKWSEQVDNGANMLVTVPGG
GDGPSGILVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAATHKQKSMFFFLLQ
TEYGDIFKVTLDHENDKVKELKIKYFDTIPVTSSICVLKSGFLFAASEFGNHALYQFQAI
GEEEDVEASSATLMETEEGFQPVFFQPRGLKNLVRIDQVESLMPVMDMKVANLFDEETPQ
IFSLCGRGPRSSLRILRPGLAISEMAVSQLPGVPSAVWTVKRNANDEFDAYIVVSFNNAT
LVLSIGETVEEVSESGFLDTTPSLAVSLIGDDSLMQIHPNGIRHIREDGRINEWRTPGKR
TIVKVGSNRLQVVIALSGGELIYFEVDMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRVLSLDPDDCMQILSVQSVSAPPESLLFLEVQASIGGEDGADHPASLFL
NAGLQTGVLFRTVVDMVTGQLSDSRSRFLGLRAPKLFAINVRGRRAMLCLSSRPWLGYIH
QGHFLLTPLSYETLEYAASFSSDQCAEGVVAVAGDALRIFTIERLGETFNETAIPLRYTP
RKFVLQPKRKLLVIIESDQGAYTAEEREAAKKECFEAAGMGENGSANAEKMENGDDDDKD
DPLSDEQYGYPKAEADRWVSCIRVLDPRSATTTCLLELQDNEAAFSVCTVNFHDKEHGTL
LAVGTAKGLQFWPKRSLIAGFIHIYKFVDDGKSLELLHKTQVEGVPLALCQFQGRLLAGI
GSVLRLYDLGKKRLLRKCENKLFPNSIVSIHTYRDRIYVGDIQESFHFCKYRRDENQLYI
FADDSVPRWLTASYHVDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLN
GAPNKVEEIVQFHIGDVVNSLQKASLIPGGGECIMYGTVMGSVGALLPFTSRDDVDFFSH
LEMHLRQDHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPLDAQRKIADELDRTPGE
ILKKLEEVRNKII
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgtacctctacagtctcactctccaacgagctaccggaatcgtttccgccataaacggc
aacttctccggcggcaaagcacaagaaatcgtagttgctcgcggcaaagttctcgatctc
ctccgaccagacgagaacggtaagctacagacagttctctctgttgaaatattcggtgct
attcgctcattagctcagtttagactaactggagctcaaaaagattatattgttgttggt
tctgattcgggcaggattgtaattttagaatataacaaggagagaaatgtctttgacaaa
attcatcaagaaacttttggaaaatctggctgtcgccgtattgttccgggtcagtatttg
gctgtggatccgaaaggaagggctgttatgattggtgcctgtgagaaacagaagctagtt
tatgttttgaatagagatactgttgctaggttaaccatttcttcgcctttagaggcacat
aagtcgcatactatatgttactcagtatgcggtgttgattgtgggtttgataatccgatt
tttgctgcgattgagttggattattcggaagctgatcaggactcgacagggcaagctgct
ggtgaagcgcagaagaatttgacattttatgagcttgatctggggcttaatcacgtgtct
aggaaatggtctgagcaggttgataatggcgctaatatgcttgttacagtgcctggaggt
ggtgatgggccaagtggtattttagtttgtgcggagaatttcgtgatttataagaatcaa
gggcatcctgatgtgagggctgtgattcctaggcgtgctgatttgcctgctgaacgtggg
gttttgatagtttctgcagcaacacataagcagaaatcgatgtttttctttctgttgcag
actgagtacggtgacatttttaaggttacattggatcatgagaatgacaaggttaaggag
ttgaagattaagtattttgacacgattccagttacttcttctatatgtgtgttgaaatca
gggtttttgtttgctgcatcagagtttgggaatcatgcattgtatcagtttcaggccatt
ggggaggaagaggatgtggaggcctcatctgctactttgatggaaactgaggaaggcttc
cagcctgtgtttttccagccaagggggttaaagaatcttgttaggattgaccaggttgag
agcttgatgcctgttatggacatgaaggttgctaatctttttgatgaagaaacccctcag
atattttcactttgtgggcgtggtcctcgctcctcattgaggatattgaggcctggtttg
gctattagtgagatggctgtgtcacagcttcctggtgtaccaagtgctgtttggactgtg
aaaaggaatgctaatgatgagtttgatgcatatattgttgtgtcctttaacaacgcaact
cttgtgctttcaattggagaaacagttgaggaagttagcgagagtgggtttcttgatacc
acaccttcccttgctgtgtctttaattggtgatgattctttgatgcaaattcacccaaat
ggcataagacatattagggaagatgggcgtattaatgagtggagaactcctggaaagagg
acaattgtgaaagttggctcaaatagacttcaagtggttattgctttaagtggaggagag
cttatatattttgaggtggatatgaccggtcagctaatggaggtggagaagcatgagatg
tctggagatgtggcctgtttggacattgcccctgttccagaaggaagacagaggtctcga
ttcctagcagttggttcgtatgataacaccatccgtgtcttgtctttggatcctgatgac
tgtatgcagattctgagtgtgcaaagtgtttcggcgcctccagaatccctcctgtttctt
gaggttcaggcatcaattggtggcgaagatggcgctgatcaccctgccagtcttttcctc
aatgctggtttgcagactggggttctatttaggacagtggtggatatggtgacaggccag
ctttctgactcccgttcccggtttttgggtttgagggccccaaaactttttgccattaat
gtgagaggtcgacgtgcgatgctgtgcttatctagccgaccctggcttggttatattcac
caagggcattttctgttaacacccctttcgtatgaaactcttgaatatgctgcttcattc
tcatctgatcagtgtgcagaaggtgtggttgctgtcgccggggatgcgttgaggattttt
acaattgagagattgggagaaacattcaatgaaactgcaatacctctaagatacactcca
agaaagtttgtgcttcaacctaagcggaaattgttggtcattattgagagtgatcaagga
gcatatacagcagaggagcgtgaagcagcaaaaaaagagtgcttcgaagctgctggaatg
ggggaaaatggaagtgccaatgctgagaagatggaaaatggtgatgatgatgataaagat
gacccgctatctgatgagcagtatggttatccaaaggctgaggcagacaggtgggtttct
tgcattagagtacttgacccaaggtcagctactactacttgcttgctggaacttcaggac
aatgaagctgcttttagcgtatgcactgtaaatttccacgacaaggagcatggaactctc
ttagctgttggtacagcgaagggactgcagttttggcccaaaagaagcttaattgctggg
ttcattcacatttataaatttgtggatgatggtaaaagcctggaactcttgcataagaca
caagtagaaggagttccacttgctttgtgtcagtttcagggaagattacttgcgggaata
ggatcagtgctgagattgtatgacttggggaaaaaaaggttgcttagaaaatgtgagaat
aagctgttccccaactccattgtctctattcacacctatcgtgatcggatttatgtgggg
gacattcaagaatcatttcatttctgcaagtacaggcgggatgaaaatcagctgtatatt
tttgctgatgatagtgttccaagatggcttacagcatcataccacgtagattttgatacc
atggccggtgcagacaagtttgggaatatctactttgtgaggttgccacaggatgtttct
gatgagatagaagaagatccaactggcggaaagataaagtgggagcagggaaagcttaat
ggagctccaaacaaggtagaggagatagtacagtttcatattggtgatgtggttaattcc
ttgcagaaggcatctctaattccaggtggtggagaatgcatcatgtatgggacagtgatg
gggagcgtgggggctctacttccattcacctctcgagatgatgttgacttcttttcacac
ttggagatgcatttgagacaagaccacccacctttgtgtggaagagatcatatggcatat
aggtctgcttattttcctgttaaggatgtgatcgatggagatctatgtgagcagttcccg
actttgccgcttgatgcacaaagaaaaattgcagatgagctggacagaactcctggggag
atactcaagaaacttgaagaagttcgaaacaagatcatctga
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