Populus nigra (Lombardy poplar): 133705701
Help
Entry
133705701 CDS
T10372
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133705701
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pnz03041
]
133705701
Enzymes [BR:
pnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133705701
Spliceosome [BR:
pnz03041
]
Complex C
Other components
Step II factors
133705701
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
WHD_HA2
AAA_22
AAA_19
nSTAND3
MTRES1_C
nSTAND_NTPase5
UL128
AAA_30
PhoH
T2SSE
FtsK_SpoIIIE
nSTAND1
TsaE
NB-ARC
ABC_tran
Motif
Other DBs
NCBI-GeneID:
133705701
NCBI-ProteinID:
XP_061987034
LinkDB
All DBs
Position
10:complement(10473143..10479915)
Genome browser
AA seq
732 aa
AA seq
DB search
MVPETQHKLENKNRSSSSPINLAAPPMLFPVIYVLQYRREIIKKQRESLPIASVKERLVQ
EVKNHDVLIIVGETGSGKTTQLPQFLFNAGFCPNGKVIGITQPRRVAAVTVAKRVAEECG
VELGLKVGYSIRFDDKTSSSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTD
VLLGLLKNVQRARLKSVIDHAVVNNKKASNGITKENEKGAECTNFLKQCQRKFPPLKLII
MSASLDARLFSEYFGGARAVHVEGRQHHVDIFYTLHAETDYVDAALITIFQIHLEEGPGD
ILVFLTGQEEIEGVERLVQEQLQKLPEESRKLVTVPIFSSLPSEQQMRVFMPAPAGHRKV
ILATNIAETSVTIPGIKYVIDPGFIKARSYDPVKGMESLIIIPTSKAQALQRSGRAGREG
PGKCFRLYPESEFEKLEDSTKPEIKRCNLSNVILQLKALGVDDIIGFDFLEKPSRAAIQK
SLEELFLLGALTDDCKLSDPVGHQMARLPLDPIYSKALILASQFNCLEEMLIAVSMLSVE
SIFYNPREKSEEAKTAKKCFASPDGDHLTLINVYRAADELLQKRRMELGIEKNEKNIKGK
NEKILRKWCRENFINSRSLRHACDIHSQIRGHVEQMGLPISSCGDDTLQFRRCLAASFFL
NAALKQPEGTYRALASGQVVQIHPTSVLHQSKVECVIFDELVQTSQKYIRNTTRIDYLWL
TELAPHYYAMQG
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggtcccagaaacacaacacaaactcgaaaacaaaaaccggtcctcaagctctccaatc
aacctcgctgcgccgccgatgctatttccagtgatttatgtattgcaatacaggagggaa
ataattaaaaaacagagagagtctctaccgattgcttcagttaaggaacgacttgtccag
gaggttaaaaaccatgacgttttaatcatcgttggtgaaaccggaagcggaaaaacaact
cagttgcctcagtttctatttaatgctgggttctgtcccaatggaaaagttattgggata
acacaacctaggcgtgtggcggctgtaacggttgctaaaagagttgcagaggaatgtggt
gttgagttgggtctaaaggttggatattccatcagatttgatgataagacttccagctca
acaaggatcaagtacatgaccgatggattgttgctgagggaagcattattggatccatat
ctctcgaggtattcagtaataattgttgatgaagctcacgagagaactgtccacaccgat
gtgttactgggcttgctgaaaaatgtgcagagagcaaggttgaaatctgtcattgaccat
gctgttgtcaataataagaaggccagcaatggtataacgaaggagaatgaaaaaggagcc
gaatgcaccaattttctcaagcagtgccaaaggaaatttcctccattgaagttaataatc
atgtctgccagtttggatgcacgtcttttctcagagtactttggtggtgccagagctgtt
catgttgaaggccgtcagcatcatgtggatatattttatacacttcatgctgagacagat
tatgtagatgcagccttgattaccatattccagatccacttggaggagggcccaggtgat
attctcgtgttcctaactgggcaagaagagattgaaggtgttgagagacttgtacaggag
caacttcaaaagttaccagaagaaagtcgaaagttggtaactgttccaatattttcatct
cttccatcagaacagcaaatgcgagttttcatgccagctccagctggacatcgtaaggtg
atattggcaacaaatattgctgagacatcagtgactatacctggaatcaaatatgttata
gatcctggattcataaaagcacgttcttacgatccggtcaaagggatggaatcattgata
attattccaacatcgaaagcccaggctcttcaaaggagtggacgtgcaggccgtgaagga
ccagggaagtgctttcgactctacccagagagtgaatttgagaagcttgaggattcaaca
aagccagagatcaaacgatgcaacctctctaatgttattttgcagctcaaggctctaggc
gttgatgatattataggatttgatttcctggaaaaaccatcaagggcagctattcaaaaa
tcgttggaggagctgtttctgctgggtgctttgacagatgactgtaagttgtcggatcct
gttgggcatcaaatggctcggcttcccttagaccctatttattccaaagctctcatcctt
gctagtcagttcaactgcttggaagaaatgttgatagctgtttcaatgctctctgtggaa
tctattttttataatcctcgtgagaagtcagaagaggcaaaaactgcaaagaagtgtttt
gcaagtccagatggtgaccaccttactttgattaatgtttatcgcgctgctgatgaactt
ttacagaagagaaggatggagcttggtatagaaaaaaatgagaaaaatattaaaggaaaa
aatgaaaagatactgagaaaatggtgcagggaaaattttattaatagtcgctcattgagg
catgcttgtgacattcacagtcagattagaggacatgttgaacagatgggtcttcctatt
tcttcttgtggagatgacactcttcaattccgtagatgccttgctgcttcatttttcctt
aatgcagctttgaagcaacccgagggaacatacagggctttagcaagtggtcaagtagtg
cagatccaccctacttctgtgttgcaccagtcaaaggtggagtgtgtaatttttgatgaa
ctagtccaaacaagtcagaagtacattcgcaacacaactagaattgattatttgtggttg
actgagcttgctcctcactattatgcaatgcagggttaa
DBGET
integrated database retrieval system
