Populus nigra (Lombardy poplar): 133705713
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Entry
133705713 CDS
T10372
Name
(RefSeq) probable pectate lyase 5
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz00040
Pentose and glucuronate interconversions
pnz01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
133705713
Enzymes [BR:
pnz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
133705713
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Gene cluster
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
133705713
NCBI-ProteinID:
XP_061987055
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Position
10:complement(3985858..3987891)
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AA seq
402 aa
AA seq
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MAIPLTLSILLLILAPNFISCSPVQDPELVVEEVHRSINASRRKLGFLSCGTGNPIDDCW
RCDPKWEKNRQRLADCAIGFGKHAIGGRDGKIYVVTDPGNDDPVNPKPGTLRHAVIQEEP
LWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKQ
GGNAYVRDSPGHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISN
NYLTHHNKVMLLGHSDSYKQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYSHWK
MYAIGGSADPTINSQGNRFLAPNDRFNKEVTKHEDAPLSEWKGWNWRSEGDLLLNGAFFT
ASGAGASSSYAKASSLGARPSSLVSSITAGAGSLACKKGSRC
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atggcaatcccactcactctttcgatcctcctgcttattctagctccaaattttatttcc
tgttcgccagttcaagatcctgaattggtagtggaggaagtacacaggagcatcaacgcc
tctagaagaaaattgggtttcctttcttgtggaaccggcaatccaatagacgattgctgg
aggtgtgaccccaaatgggagaagaatcggcagagattagcagattgtgcaattgggttc
ggtaagcatgctatcggtggcagggatggtaagatatatgtagtgacagaccccgggaat
gatgaccctgtgaatcccaagccaggcactcttaggcatgctgttatacaagaagagcct
ttatggatcattttcgctcgagacatggtgatcaagcttaaggaagagctgatcatgaac
tctttcaagacgatcgatggaagaggagccagtgtgcacattgctggtggtccatgcatc
actgtacagtatgtgaccaacattataattcacggtataaatattcatgattgtaagcaa
ggagggaatgcttatgtgagggattccccaggtcattatggatggaggactatatcggac
ggtgatggggtgtcgatattcggaggcagccatgtgtgggtggatcattgctctttatcc
aattgcaatgatgggttgattgatgcgattcatggatccacagccataacaatctcaaac
aattacttgacccatcacaacaaggtcatgctcttgggccatagtgatagctataaacaa
gacaagaacatgcaagtcaccattgccttcaaccactttggagaagggcttgtgcagaga
atgccaaggtgtagacatggatatttccacgtggtaaacaacgactactcgcattggaaa
atgtacgcaattggaggcagtgctgatcctacaattaacagccaaggcaataggtttctt
gctcccaatgacagatttaataaagaggtaactaaacatgaggatgcaccactaagtgaa
tggaagggttggaactggaggtctgaaggggatttgctgttaaacggggcattcttcaca
gcatctggagctggagcttcctctagttacgccaaggcatccagcttaggtgcaagacca
tcttccttggttagctccatcacagcaggagcaggttcacttgcttgcaagaagggttcc
cgttgctga
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