Populus nigra (Lombardy poplar): 133706255
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Entry
133706255 CDS
T10372
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133706255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pnz03041
]
133706255
03009 Ribosome biogenesis [BR:
pnz03009
]
133706255
Enzymes [BR:
pnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133706255
Spliceosome [BR:
pnz03041
]
Complex A
U1 snRNP components
U1 related factors
133706255
Complex B
133706255
Ribosome biogenesis [BR:
pnz03009
]
Eukaryotic type
Pre-60S particles
Helicases
133706255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DUF6506
AAA_22
Cas3-like_C_2
Terminase_6N
Motif
Other DBs
NCBI-GeneID:
133706255
NCBI-ProteinID:
XP_061987730
LinkDB
All DBs
Position
11:complement(281190..287537)
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AA seq
557 aa
AA seq
DB search
MSYIPPHLRNSSSTTTVTTRRTQSPPLTDTNLSHSSSNSTSSAPSSFSTFNSLSLRTSAS
VARTISVPQPVFPQWTPSDRVLRFTPDQIEEIRSQLKINVSVASGSPPAPAPIESFEDMC
LHQSIMKDIAHHEFTRPTLIQAQAMTVALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQP
PVQRGDGPLAMVLAPTRELAQQIEKEVKRFSRSLESFRTAIVVGGTKSADQGSELRAGVD
VIVATPGRLIDHLQQGNTSLSRISFIVLDEADRMLDMGFEPQIREVMHNLPEKHQTLLFS
ATMPVEIETLAQEYLISPVQVKVGKVSSPTANVSQILTKVSESEKIDCLLALLVEDASQA
EKSNQSFPLTIVFVERKTRCNEVAEALVAQGLQAVALHGGRSQSEREAALHDFRSGSTTI
LVATDVASRGLDVTGVARVINLDLPKKMEDYVHRIGRTGRAGSTGQATSFYTDRDLFLVA
QIKKAIADVESGNTVAFATGKAARRKEREAAASQKEARNALSKVMGSTCINIEDKYRFMI
APSVITSEGAADSAWDD
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtatatccctcctcacctgagaaactcaagctcaaccactaccgttactactcgc
agaactcagtcaccgcctttaacagacactaatctctcccattcctcttcaaattccacc
tcctccgccccttcttctttctccacattcaactctctctccttacggacctccgcctcc
gtcgcgcgaaccatctcagttcctcaacctgtttttcctcagtggacgccctccgaccgc
gtccttcgcttcactccagatcagattgaagaaattcgttctcagctcaaaataaatgtc
agtgttgcttcgggttcacctcctgcacctgcgcctattgaatcatttgaagatatgtgt
ttgcatcaaagtatcatgaaggatattgcgcatcatgagtttacgcgaccgactttgatt
caggctcaggcaatgacagttgcgcttagtggaagggatttgttgggttgtgctgaaact
ggtagtggaaaaactgcagcatttaccattcctatgatacagcattgcttggctcaacct
cctgttcagcgtggtgatggaccattggcgatggtgttggctcctaccagagaacttgct
cagcaaattgaaaaagaggttaaacgttttagtagatctcttgagtccttcagaactgcc
atcgtggtgggtggaacaaagtctgctgaccagggatcagagctacgagcgggagtggat
gtaattgttgctactcctggaagattaattgatcatttacaacaaggaaacacttccctt
tccagaatttcatttatcgttctggatgaagctgatagaatgcttgacatgggctttgaa
ccacagattagagaggttatgcacaaccttccagagaagcatcaaactttgctgttcagt
gcaactatgcctgtggaaattgaaacactagcacaggagtacttaattagccctgttcaa
gtcaaggtaggaaaagtgagtagccctactgcaaatgtgtctcaaattctgacaaaggtt
tctgaaagtgagaagattgattgccttctagctctgcttgtggaggacgcatctcaggct
gagaaatccaaccaatcctttccattgactattgtgtttgtggagaggaagacaaggtgc
aatgaagttgctgaagctttggtagcgcaaggtttacaggcagttgctcttcatggaggc
cgcagtcagagtgaaagagaagctgctttgcatgattttaggagtggatctactactatt
ttggttgccactgatgttgcatctcgtggattggatgtaactggagttgctcgtgtgata
aatctggatctcccaaagaaaatggaagattatgtgcatcgtattggaaggacaggccgt
gcagggtcaactggccaagctacttcattttacactgatcgagatctgttccttgtggca
caaataaagaaagcaatagcagatgtggaatcggggaacacagttgcttttgcaactggc
aaggctgcaagaaggaaggaaagagaagcagctgcttcacaaaaggaagctaggaatgct
ctgtccaaggtgatgggatccacatgtataaacattgaggataagtataggttcatgata
gccccttcagtcatcacaagtgagggcgcggccgacagtgcctgggatgattag
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