Populus nigra (Lombardy poplar): 133706362
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Entry
133706362 CDS
T10372
Name
(RefSeq) autophagy-related protein 13b-like
KO
K08331
autophagy-related protein 13
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
133706362
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pnz04131
]
133706362
03029 Mitochondrial biogenesis [BR:
pnz03029
]
133706362
Membrane trafficking [BR:
pnz04131
]
Autophagy
Autophagosome formation proteins
ULK complex
133706362
Atg1 complex
133706362
Mitochondrial biogenesis [BR:
pnz03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
133706362
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG13
Motif
Other DBs
NCBI-GeneID:
133706362
NCBI-ProteinID:
XP_061987873
LinkDB
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Position
11:complement(14108329..14112816)
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AA seq
615 aa
AA seq
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MASSNNSTHTEAAEMEQIITEFFPKSLQIILESRSPFMSSRNYSGEQMVSLSPSSSSSSS
PSVRPRDKWFNLALRECPAALENLDLWHQSYLEPMIVDVILVQVPPVRWDPVNYPPQREP
VRNFSTKDQYPFHWNSDQEELGCEGKIEKIVERWEVQYEGRKSRDSGTGSRKLSNTFQTC
YMKSILLFRSLYATVKLLPAYKIFRDLNSSGEIRAYTLTHRVSSFVEPFTREEEAEMQRF
VFTPVDTSCGRLCLSVLYHSSLSDFSSESSTPVSPQFIPDYVGSPLAEPVKRFPSLPVSQ
GSLSSLPFSRQHSWYYDHNKASPPSFSFSPSPNRSGKHGSISNPSSCRFQPSSLPPHPPE
VPSVHKKNTSFDEHYPSPSYTPSPSPSPPIYIPETHLSTAVSQSESTPVSIPATKHASSP
LLSNKQNLPPSPPLKATTSCNPKTDESTGLVHPGATDEKLFSPRKDDIRKYASVKTLSNS
SPQISFSRTSSRPETFDKKGHLSDPLEPGGLFPIKKSQDAAVGALVHTLMKPPPLCQDFS
GSAALPPDSRSKMWSCNLQEYNPISVAPAGQQAAASGVASSGLIASKTAADALEELKRYE
EMKDLLLIQAGRSNA
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggcatcatcaaataatagtacacacactgaggctgcagagatggaacaaattatcact
gaattttttcctaagagtcttcagattatacttgagtcgaggtctcctttcatgtcatcg
cgtaattatagtggtgaacaaatggtatccttatctccatcttcttcttcctcctcctcg
ccgagtgtgaggccaagagataaatggttcaatttagctcttagggaatgcccggctgct
cttgagaatcttgatctttggcaccaaagctatttggaaccgatgattgttgatgtgatt
ttggtgcaggtgccaccagttcggtgggatcctgtgaattatcccccccaaagggagcct
gttaggaatttttcgaccaaggatcagtatccatttcactggaattcagatcaggaagaa
ttagggtgtgagggtaagattgaaaagattgtagagaggtgggaagtgcagtatgagggt
cggaagtcaagggatagtggtactgggagcaggaaacttagcaatacctttcaaacatgt
tatatgaaatcaatattacttttcaggtctttgtatgcaactgttaagcttttacctgca
tataaaattttccgtgacctcaattcatcaggggaaattcgtgcatacacgcttacacat
agggtgtcttcttttgttgagccctttacacgcgaagaagaggctgaaatgcagcgattt
gtgttcaccccagtggatacttcctgtggtaggctttgcctttcggtgctgtatcactct
tcattatcagatttcagctctgagtcttcaactcctgtgtccccccaatttatcccagat
tatgttgggagtcctttggcagaaccagtgaagagattcccctctcttcctgtgtcgcaa
ggttctctgtcatctttgccattctcaagacaacatagttggtactatgaccataataaa
gcctcaccaccttcattttctttctcaccatcacctaatcgctcaggaaagcatggatca
atatctaatcctagttcctgtcgattccaaccttcgagcttgcctcctcatccacctgaa
gtgccttcagttcataagaagaatacgagctttgatgaacattatccctctcctagctac
acaccatctccatccccatcaccaccaatctatattcctgagactcatctttccacagct
gtttcacaatctgaaagtacacctgttagcatacctgctaccaagcatgctagttctccc
ctgttgtccaacaagcaaaacttgcccccatctccaccactcaaagctaccacatcttgc
aatccaaagactgatgaaagtacaggtttggttcaccctggtgcaacagacgagaagttg
ttctctcctcggaaagatgacattagaaaatatgccagcgtgaaaacactatccaacagc
tctccgcagatttcattttccagaacttccagcagacctgagacatttgataaaaaaggc
catctatctgacccccttgagcccggaggtctctttccgattaaaaaatcccaagatgca
gctgttggtgctcttgtacacacgctgatgaaacccccacctttatgccaagacttctct
ggttcggctgctttgccaccagattctaggtccaaaatgtggagctgcaacctccaagaa
tacaatccaatctccgtagcaccagcgggccagcaggctgctgcgtctggtgttgcatct
tcaggtctcattgcttcaaaaacagcagctgatgcattggaagaactgaaaagatacgaa
gaaatgaaagacttgttgcttattcaagctggcaggtccaacgcttaa
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