Polaribacter sp. ALD11: CW731_06530
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Entry
CW731_06530 CDS
T05264
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
poa
Polaribacter sp. ALD11
Pathway
poa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
poa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CW731_06530 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
poa03021
]
CW731_06530 (rpoC)
03400 DNA repair and recombination proteins [BR:
poa03400
]
CW731_06530 (rpoC)
Enzymes [BR:
poa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CW731_06530 (rpoC)
Transcription machinery [BR:
poa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CW731_06530 (rpoC)
DNA repair and recombination proteins [BR:
poa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CW731_06530 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AUC84967
LinkDB
All DBs
Position
complement(1473900..1478174)
Genome browser
AA seq
1424 aa
AA seq
DB search
MARKQEKYTVKKFNKISIGLSSPEAILEISKGEVLKPETINYRTHKPERDGLFCERIFGP
VKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPVAHIWYFRSLPNKM
GYLLGLPSKKLDMIIYYERYVVIQPGIAKNVEGEPLQKMDFLTEEEYLDIVDELPQENQY
LDDEDPNKFIAKMGAECLIDLLARIDLEQLSFDLRHKANTETSKQRKTEALKRLNVVEAF
RDSQKNRENNPEWMILKAVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLV
EIKAPEVILRNEKRMLQESVDSLLDNTRKSSAVKTESNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPELRLSECGIPKDMAAELYKPFVIRKLIERGIVKTVKSAKKIIDR
KEPVVWDILENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLACSAFNADFDG
DQMAVHLPLGPEAILEAQLLMLASHNILNPANGAPVTVPSQDMVLGLYYMTKERVSTPEV
KIKGEGLTFYSPEEVTIAFNEEMVDLNAGIKVRTYDVDENGEQVRKIIKTTVGRVLFNEK
VPAKAGYINEVLTKKNLRGIIGGILKATDIPTTGDFLDEIKNMGYKFAFQGGLSFSLGDI
IIPKEKQGMIDAANKEVEVIVGNYNMGMLTQKERYNQVIDIWGRTNNDLTELSMKRLRED
QQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIINEEDCGTLRGLEVAPLKKND
EIVESLSDRIEGRISLNDVYHPLTEELILEANEPITFKLAQAVEKSGIDSVEVRSALSCE
STKGICAKCYGQSLSTLNKVQIGEAVGVIAAQSIGEPGTQLTLRTFHVGGVAGNISQENK
LIAKFDGNVTIDDLRTVVGKDNDGKEIDIIISRTAEIKIIDKKTGITQSTNILPYGSIIF
DKERKTIKKGDAIVQWDPFNGVIVSEFEGKVKFDNLQQGINYSVEIDEQTGFQEKVMIDS
KNKKIIASLIIEDKDGNALRSYSLPVGAHLMIDDGQMVESGHTLVKIPRKSGKAGDITGG
LPRVTELFEARNPSNPSVVSEIDGVVSFGKIKRGNREIIVESKTGDISKYLVKLSNQILV
QENDFIKAGMPLSDGATTPSDILRIKGPSAVQEYLVNEIQEVYRLQGVKINDKHFEVVVR
QMMRKVKIIDSGDTLFLENQLIHKIDFIKDNDAIYGMKVVEEAGDSENLKPGQIISARQL
RDENSLLRRNDQNLVEARDAKPATAEQVLQGITRASLQTKSFISAASFQETTKVLNEAAV
SGKIDTLEGLKENVIVGKRIPAGTGMRAYEKILVGPKDEIEKSF
NT seq
4275 nt
NT seq
+upstream
nt +downstream
nt
atggcaagaaaacaagagaaatacactgtaaaaaagtttaacaaaatctcaattggttta
tcatcaccagaagctattttagaaatctctaaaggtgaagttttaaaaccagaaactata
aattaccgtacgcacaaaccagaaagagatggtttattttgtgagcgtattttcggtcct
gtaaaggattatgaatgtgcttgtggaaagtacaaaagaatacgttacaaaggaattgtt
tgtgatagatgtggggtagaagttacagaaaagaaagtacgtagagatagagtaggacat
atcaatttggtagttcctgtagctcatatttggtactttagatcattacctaacaaaatg
ggataccttttaggtttgccatctaaaaagttagacatgattatttactacgagagatac
gtagtaatacaacctggtattgctaagaatgttgaaggagaaccattgcaaaaaatggat
ttcttaacagaggaggagtacttagatattgtagatgaattaccacaagagaatcaatat
ttagatgacgaagacccaaacaagtttatagctaaaatgggtgctgaatgtttaattgat
ttattggctagaatagatttagagcaattatcatttgatttaagacataaagcgaatact
gaaacttctaaacaacgtaaaacagaagcattaaaacgtttaaatgttgttgaagcattt
agagattctcaaaagaatagagagaacaatccagaatggatgatcttgaaagcagttccg
gtaattccaccagaattaagaccactagtgccattagatggaggtcgttttgctacttca
gatttaaatgatttatacagaagagtaattatcagaaacaatcgtttaaaaagattggta
gagataaaagctcctgaagttattttacgtaatgaaaaacgtatgttacaggaatctgtt
gattctttattagataacacacgtaaatcatctgcagtaaaaactgaatctaatagacct
ttaaaatctttatcagattcattaaaaggtaaacaaggacgtttccgtcagaatttatta
ggaaagcgtgttgattattctgcacgttctgtaattgttgttggaccagaattaagactt
tcagaatgtggtatccctaaagatatggcagctgaactttacaagccttttgtaattaga
aaattaattgaaagaggaattgtaaaaacagttaaatctgcaaagaaaataatagacaga
aaagaaccagttgtttgggatattttagaaaatgtaattaaaggtcatccagttttatta
aacagggctcctacattgcacagacttggtatacaggcttttcaaccaaaattaattgaa
ggaaaagcaattcaattacatccactagcatgttcagcatttaatgccgatttcgatggg
gatcaaatggcggttcacttaccattagggccagaagctattttagaagcacaattatta
atgttggcttctcataatatcttaaatcctgcaaatggtgctccagttactgtaccttct
caggatatggtacttggtttatactatatgacaaaggagagagtctctactccagaagtt
aaaattaaaggagaaggattaactttttattcaccagaagaagtaacgattgcttttaac
gaagaaatggtagacttaaatgctggaattaaagtaagaacttacgatgttgatgaaaac
ggagagcaagttcgaaaaattataaaaactactgttggtagagttttatttaacgaaaaa
gttcctgctaaagctggttacattaacgaagtattaactaagaaaaacttacgtggaatt
attggtggtattttaaaagctacagatattccaacaacaggagatttcttagatgaaata
aaaaacatgggatataaatttgccttccaaggtggtttatcattctcattaggtgatatt
attattcctaaagaaaaacaaggaatgattgatgctgctaataaagaagttgaagttatt
gtaggaaactataatatggggatgttaacgcaaaaagagcgttataatcaggtaattgat
atttggggtagaaccaataacgatttaactgaattatctatgaagcgtctgcgtgaagac
caacaaggttttaactcggtatatatgatgcttgattctggtgcaaggggttctaaagaa
caaattcgtcagttaacaggtatgcgtggattaatggcaaaacctaaaaaatctactgca
ggtggtggagaaattattgagaatccgattctttctaactttaaggaaggtttatctatt
cttgaatactttatctctacacacggtgcacgtaaaggattagcagataccgcgttaaaa
acggcagatgctggttacttaacacgtagattagtagatgtttctcaagatgttattatt
aatgaagaagattgtggcacattaagaggtttagaagttgctccattaaagaaaaatgat
gagattgtagaatctttatcagatagaattgaaggacgtatttctttaaacgatgtatat
catccattaacagaagaactaattttagaagcaaatgaaccaattacttttaaattagcg
caagctgttgaaaagtctggtatcgatagcgttgaagttagatctgcattatcatgtgaa
tctacaaaaggtatttgtgcaaaatgttatggtcagagtttatcgactcttaacaaagtt
caaattggtgaggcagttggtgtaattgcagcacaatctattggagagccaggtacacag
ttaacgttacgtacattccacgttggtggggttgctggtaacatttctcaagagaataag
ttaattgctaagtttgatggtaatgtaactatagatgatttaagaactgtagttggtaaa
gacaatgatggaaaagaaatagatattattatttctagaacagcagagattaaaattata
gataagaaaacgggtattacacagagtacaaacattcttccttacggttctattattttt
gataaagaaagaaaaacaatcaaaaaaggagatgcaattgtacagtgggatccatttaac
ggtgtaattgtttctgaattcgaaggaaaagtgaagtttgacaacttgcaacaaggtatt
aactactctgttgaaattgatgagcaaactggtttccaggagaaagtaatgattgactct
aagaacaagaaaattattgcttctttaattattgaagacaaagacggtaacgctttacgt
tcttacagtttacctgtaggtgcacacttaatgattgatgatgggcagatggtagaatct
ggacatacgttagttaaaataccaagaaaatctggtaaagcaggagatattactggaggt
ttaccacgtgtaacagaattattcgaagcacgtaacccttctaacccttctgtagtttct
gagattgatggtgttgtttctttcgggaaaatcaaacgtggaaatagagagattatcgtt
gagtctaaaactggagatattagtaagtatctagtgaagctttctaatcagattttagtt
caagagaatgactttattaaagcaggtatgcctttatcagacggagcaacaactccttca
gatattttaagaataaaaggaccttctgcagtacaagaatacttagtaaatgaaatacaa
gaagtatatcgtttacagggtgtgaaaattaatgacaagcatttcgaagttgttgttcgt
caaatgatgcgtaaagttaaaattatagattctggagatacattattcttagagaatcaa
ttaattcataagattgactttatcaaagacaatgatgcaatttatggaatgaaagttgtt
gaagaggctggagattctgagaacttaaaacctggtcagattatttctgcacgtcaatta
agagatgaaaattctttattaagaagaaatgatcaaaacttagtggaggcaagagatgct
aaaccggcaacggctgaacaagttttacaaggtattacaagagcatcacttcaaacaaaa
tcgtttatttctgcagcttctttccaagaaactacaaaagtattaaacgaggctgctgta
agtggtaaaatagatacattagaaggcttaaaagaaaatgtaattgttggtaagagaata
ccagcaggaacaggaatgagagcttatgaaaaaattctagttggtcctaaagacgaaata
gaaaagagtttctaa
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