Polaribacter sp. ALD11: CW731_13655
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Entry
CW731_13655 CDS
T05264
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
poa
Polaribacter sp. ALD11
Pathway
poa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
poa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CW731_13655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
poa03021
]
CW731_13655
03019 Messenger RNA biogenesis [BR:
poa03019
]
CW731_13655
Transcription machinery [BR:
poa03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CW731_13655
Messenger RNA biogenesis [BR:
poa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CW731_13655
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
NACHT
Mor
AAA_22
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
AUC86258
LinkDB
All DBs
Position
complement(3131752..3133470)
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AA seq
572 aa
AA seq
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MFEISELKAKTLAELQGISKSIGLTKTSQLKKLDLVYQILDTQAANPSKANVAATPKKEE
VEKTEKPKRRRVTKKPQAVENTTPLEKTQVVENTETVTNIKTVEKTADVSTTEKPKPTPR
PQRKPPVKKPIKAEEKKEVVISKVKEEKQEQKPANQPNRPQQNRNNPPQKNKNNNQSREK
VNNSRSNGNKSTNRYRDPDFEFDGIIESEGVLEMMPDGYGFLRSSDYNYLSSPDDIYVSQ
SQIKLFGLKTGDTVRGNVRPPKEGEKYFPLIRVSKINGLNPNIVRDRVSFEHLTPLFPQE
KFNLAEKGSSLSTRIIDLFSPLGKGQRGMIVAQPKTGKTMLLKDVANAIAANHPEVYQIV
LLIDERPEEVTDMKRNVRGEVVASTFDEPADKHVKVANIVLEKAKRLVECGHDVVILLDS
ITRLARAYNTVAPASGKILSGGIDANALHKPKRFFGAARNIENGGSLTIIATALTETGSK
MDEVIFEEFKGTGNMELQLDRNISNRRIYPAIDLIKSSTRRDDLLLDAKTVQRMWVLRKY
LADMNPIEAMEFINDRIKLSKNNDEFLISMNG
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgttcgaaatctcagaactgaaagcaaaaactcttgctgaattacaaggtatctctaaa
tctattggtcttaccaaaactagtcagttaaaaaaattagatttagtatatcaaatttta
gatacacaagctgcaaatccttcaaaagcaaacgtagctgcaactcctaaaaaagaagaa
gttgaaaagacagaaaaaccaaaaagaagacgtgttactaaaaaacctcaagcggtagaa
aacacaactcctttagagaaaacacaggttgtagaaaatactgaaacagttacgaacatt
aaaactgttgaaaaaactgctgatgtttctactaccgaaaaaccaaaacctactccaagg
ccacaaagaaaacctcctgtaaaaaaacctattaaagcagaagagaaaaaagaggttgtt
atttctaaggtaaaggaagaaaagcaagaacagaaacctgcgaatcaaccaaacagacca
caacaaaatagaaacaatcctccccagaagaacaaaaacaacaaccagagcagagaaaaa
gttaacaatagtagaagtaacggaaataaatctacaaatagatatagagaccctgacttt
gaatttgatggtattatagaaagtgaaggtgttttagaaatgatgccagatggctatggt
ttcttacgttcttctgactataactacttatcatcaccagatgatatatatgtttctcaa
tctcaaattaagttatttggtttaaagactggtgatacagtaagaggaaatgttcgtccg
ccaaaagaaggtgaaaaatatttccctttaattcgagtatcaaaaattaacggattaaac
cctaacattgttagagatcgtgtttcttttgaacatttaactccattgtttcctcaagaa
aaattcaatttagctgaaaaaggaagttctttatctacaagaattatcgatttgttttct
cctttaggaaaaggacaacgtggtatgattgtagcgcaacctaaaactggtaaaaccatg
ttattaaaggatgtagcgaatgctattgcggcgaatcacccagaagtgtatcaaattgtt
ttattgattgatgagcgtccggaagaggttacagacatgaaacgtaatgtacgtggagaa
gttgtagcttcaacttttgatgaaccggcagacaaacatgtaaaagtggcaaacattgtt
ttagaaaaagcaaaacgtttggtagagtgtggacatgatgttgttattcttttagattca
attacacgtttggcaagagcttacaatactgttgcaccagcttcaggaaaaatactttct
ggtggtatcgatgcaaatgcattacacaaacctaaacgtttctttggtgctgctagaaac
atagaaaatggtggttctttaaccattatcgcaactgcacttacagaaactggttctaaa
atggacgaagtaatcttcgaagaatttaaaggaacaggtaatatggaacttcaattagat
agaaatatttctaacagaagaatctacccagcaatcgacttaattaaatcttctacaaga
agagacgatctattattagatgcgaaaactgtacagagaatgtgggttttacgtaaatat
ttagcagatatgaatcctattgaagcaatggaattcattaatgatagaattaaattatct
aaaaataatgatgagttcttaatctctatgaacggataa
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