Polaribacter vadi: LPB03_10770
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Entry
LPB03_10770 CDS
T04504
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pob
Polaribacter vadi
Pathway
pob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPB03_10770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pob03019
]
LPB03_10770
03016 Transfer RNA biogenesis [BR:
pob03016
]
LPB03_10770
Enzymes [BR:
pob01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LPB03_10770
Messenger RNA biogenesis [BR:
pob03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LPB03_10770
Transfer RNA biogenesis [BR:
pob03016
]
Prokaryotic type
tRNA degradation factors
LPB03_10770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_RNR_1st
S1CSD-TOTE-2
Rrp44_S1
Motif
Other DBs
NCBI-ProteinID:
AOW17907
UniProt:
A0A1B8TSF5
LinkDB
All DBs
Position
complement(2497644..2499863)
Genome browser
AA seq
739 aa
AA seq
DB search
MTKKKKKIYKKKGKIVKDLTKNIFRILNEDSSKSFNYKQIAAKLKIEDTDGKNQVIQKLA
ELTGSKKLIEIDRGKFQINEDRKYSIGTLDITSNGNGYFMTDDYENDIFTPNNNLGKGLH
GDVVRAYVYKRKRSNKLEADVVEIIERAKNEFVGVLQKSKNFGFVICDNNKMYADIFISE
SKMNGAEHGDKVQAKLIDWPENSKNPFGKITTVLGKPGDHNTEMHSILLEYDLPYEFEPE
VEKEAEELPIEITKEEIAKRRDMRGDLTFTIDPKDAKDFDDALSFTKLENGNFEIGIHIA
DVSHYLQPDTILDDEAYARATSVYLVDRVVPMLPEMLSNGVCSLRPNEEKLTFSAVFEIN
EKAQIVGEWFGRTVTYSDQRFAYEEAQSIIENVQLSEDVQPYTMPTDISITDASYEVKAE
VVEATLKLDELAKILRKKRMKQGAISFDRVEVKFNLDEDANPVGVFFKTSQDANKLIEEF
MLLANRKVAEFIGSHKGRPSNKTFIYRVHDEPNDEKLASLQNIIGKFGYKINTDTKESTS
ATLNQLLSDVQGKAESNMIETLAIRTMSKAVYTTQNIGHYGLAFDYYSHFTSPIRRYPDV
MTHRLLQHYLDGGESPKALPYEEKCKHSSQREELASKAERSSIKYMQVKYMQDHKEEIFD
GVITGVTEWGIYVEIAANKCEGMVRIRDIKSDYYIFDEEQYAIVGQSTKNMYQLGDDVKV
QVKKTDLERKHLDFNLIEE
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaaaagaagaaaaaaatatataaaaagaaaggaaaaattgtaaaagatttaact
aaaaatatattcagaattttaaatgaagacagtagtaagtctttcaattataaacaaata
gcagccaaattaaaaattgaagatactgatggtaaaaaccaagttattcaaaaattagca
gaattaacaggctcaaaaaaattaatagaaatagacagaggtaaatttcaaattaatgaa
gatcgtaaatattccattggtactttagatattacctctaatggaaatggatattttatg
acagatgattatgaaaacgacatttttacacccaataacaatcttggaaaaggtttgcat
ggagatgtggttagagcctatgtttacaaaagaaaaagaagtaataaactagaggcagac
gttgtagaaattatagaacgcgcaaaaaacgaatttgttggtgttttacaaaaaagcaaa
aactttggttttgtaatttgtgataacaacaaaatgtatgcagatatttttatctccgaa
agtaaaatgaatggtgcagaacatggagataaagtacaagcaaaactaattgattggcca
gaaaattctaaaaatccgtttggtaaaataaccacagttttaggaaaaccaggagatcat
aatacagaaatgcattctattttattagaatatgatttgccttacgaatttgagccagaa
gtagagaaggaagcagaagagttaccgatagaaattaccaaagaagaaattgccaaacgt
agagatatgagaggcgatttaacctttacaatcgatccaaaagatgccaaagattttgat
gatgcattatcattcacaaaattagagaatggcaattttgaaattggaattcatattgca
gatgtttcacattatttacaaccagatactattttagatgatgaagcgtatgcaagagca
acctctgtttatttggtagatagagtagtgccaatgttaccagaaatgttaagtaatggc
gtttgttctttaagaccaaatgaagaaaaattaacattttctgctgtttttgaaatcaat
gaaaaagcacaaatagtaggggagtggtttggaagaacagtaacgtattcagaccaacgt
tttgcgtatgaagaagcacaaagtattatagaaaatgtacaactttctgaggatgtgcag
ccttatacaatgcctacagatatttctatcacagatgcatcttacgaagtaaaagctgaa
gttgtagaagctactttaaagttagatgaattggcaaaaattcttcgtaaaaagagaatg
aaacaaggtgcaatttcttttgatagagtagaggtgaagttcaatttagatgaagatgca
aatcctgttggagttttctttaaaacaagccaagatgctaataaattaattgaagaattt
atgttgttagccaacagaaaagtagcagaatttattggaagtcataaaggaaggccatca
aacaaaacgtttatttatagagtacatgatgagccaaatgacgagaaattagcttcgcta
caaaatatcattggtaaattcggttataaaataaatacagataccaaagagagtacatca
gcgactttaaatcaacttttaagtgatgttcaaggcaaagcagaatcgaatatgattgaa
actttagctattagaaccatgagtaaagctgtttatacaactcaaaatattgggcattat
ggtttggcttttgattattatagtcattttacatcaccaataagacgttatcctgatgta
atgacacatagattgcttcaacattatttagatggaggagaatcgccaaaagcgcttcct
tatgaagaaaagtgtaaacattcttcgcaaagagaagaattagcatcaaaagcagaaaga
tcatctataaaatacatgcaagttaaatacatgcaagatcataaagaagaaatttttgat
ggtgtaattacaggcgttactgaatggggaatttatgtagaaattgctgcgaataaatgt
gaaggaatggttagaattagagatataaaaagcgattattatatttttgatgaagagcaa
tatgcaattgttgggcaatccacaaaaaacatgtatcagttaggtgatgatgtaaaagtg
caagtaaaaaagacagatttagaacgcaaacatttagattttaatttaattgaggagtaa
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