Polaribacter vadi: LPB03_11360
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Entry
LPB03_11360 CDS
T04504
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pob
Polaribacter vadi
Pathway
pob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPB03_11360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pob03019
]
LPB03_11360
Enzymes [BR:
pob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LPB03_11360
Messenger RNA biogenesis [BR:
pob03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LPB03_11360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
ERCC3_RAD25_C
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AOW18015
UniProt:
A0A1B8TSW5
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All DBs
Position
complement(2629406..2630725)
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AA seq
439 aa
AA seq
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MSFKSLGLSDALIKAVEEKGYTTPSPIQQKAIPHILEGKDILASAQTGTGKTAGFTLPVL
QYLTATKHPKYRPLRVLILTPTRELAAQVHENVREYSKYVDIRSTVVFGGVKAASQIKTL
RQGVDILVATPGRLLDLHDQKAVSFKRVDVLILDEADRMLDMGFARDLNKIISFMPTKRQ
NLMFSATFSNDIKKLASGILHNPVEVETAPQNSTAKKVSHKVYNVDKNQKTPLIIKLIKD
NNWEQVLVFTRTKHGANKLTEKLIKSGISAAAIHGNKSQGARTKALKNFKDNSIKILVAT
DIAARGLDIPLLPHVINFELPNVPEDYVHRIGRTGRAGAEGEAISLVCSEETEYQKEIEK
ILNEKLKTSVLEGFEPTDTAPPKRAATQSKGSFGKKKKGGSSDSANQNKPKRKPHFKGNK
PAGATSGRGRTGAPKKKRY
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttcaaatcattaggattatctgatgctttaataaaagcagtagaagaaaaagga
tacacaactccttctccaattcaacaaaaagcaattccacatattttagaaggtaaagat
attttagcttctgcacaaacaggaacaggaaaaacagcaggttttaccttgccagtttta
caatatttaacagctacaaaacacccaaaatacagacctttacgtgttttaattttaaca
cctacaagagaattagcagctcaagtacacgaaaatgttagagaatatagcaaatatgta
gatattagatctacagttgtttttggtggtgtaaaagcagcatcgcaaataaaaacatta
agacaaggagtagatattttagtagcaactcctggtagattattagatttacatgatcaa
aaagccgtttcttttaaacgagttgatgtgttaattttagatgaagctgatagaatgtta
gatatgggttttgcaagagacttaaacaaaattattagttttatgcctacaaagcgtcaa
aatttgatgttttctgcaactttttctaatgatattaagaaattagcaagtggtatttta
cataatcctgtggaagtagaaactgctccacaaaactcgactgcaaaaaaagtatctcac
aaggtttataatgttgataaaaatcaaaaaacgcctttaattattaagttgataaaagac
aataattgggagcaagttttagtttttacaagaacaaaacatggtgctaataaattaact
gaaaagttgataaaatctggtatttctgctgctgcaattcacggaaataaaagtcaaggt
gcaagaacaaaagcgcttaaaaactttaaagataattctattaaaattttagtagcaaca
gatattgctgctcgtggtttagatattcctttattgcctcacgttattaattttgaactg
ccaaatgtacctgaagactatgtgcatagaattggtagaacaggaagagctggtgcagaa
ggagaagcaatttctttggtttgtagtgaagaaactgaataccaaaaagaaatagaaaaa
atcttaaacgaaaaactaaaaacttctgttttagaaggttttgaaccaactgatactgca
ccaccaaaaagagcagcaacacaaagtaaaggttcttttggaaagaagaaaaaaggagga
agttcagattctgctaatcaaaataaaccaaaaagaaaaccacattttaaaggcaataaa
cctgcaggtgcaacttctggaagaggaagaactggcgctcctaaaaagaaaagatattaa
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