Polaribacter vadi: LPB03_15115
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Entry
LPB03_15115 CDS
T04504
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pob
Polaribacter vadi
Pathway
pob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPB03_15115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pob03019
]
LPB03_15115
03400 DNA repair and recombination proteins [BR:
pob03400
]
LPB03_15115
Enzymes [BR:
pob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LPB03_15115
Messenger RNA biogenesis [BR:
pob03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LPB03_15115
DNA repair and recombination proteins [BR:
pob03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LPB03_15115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RQC
HTH_40
HRDC
RecQ_Zn_bind
Helicase_Sgs1
Agglutinin_C
Sigma70_r4_2
TnsD
HTH_24
Fumerase_C
Rhodanese
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AOW18703
UniProt:
A0A1B8TQI9
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All DBs
Position
3504865..3506976
Genome browser
AA seq
703 aa
AA seq
DB search
MINQTHTILKNTFGYDNFRPLQEEIINRTIEGKDSFVLMPTGGGKSMCFQIPALIFDGIT
IVVSPLISLMKDQVQALKSNGIKADFFNSSISAEEENNVITKAINGDLQLLYLSPEKLIS
VSNTWLKQLNIKLVAIDEAHCVSMWGHDFRPEYTQLKIFRNSLPNVPFMALTATADKSAR
KDIEAQLGLKKSKLFISSFDRKNLSIEVRGQVQKRKKLQEIANFIERRKNESGIIYCLSR
KNTEEVASYLKQEGHSVAFYHAGMDNEERENTQTDFINDETKIIVATIAFGMGIDKSNVR
FVIHYNLPKNLEGYYQEIGRAGRDGLPSETVLYFNMRDFVLYSQFADQGANVVMQKEKLS
RMLQFAEAKSCRRKILLSYFGEHLSENCGNCDVCENPPKGFDGTILSQKALSGIVRMGEK
DGITMLINVLRGSNNADIHEKNYATLKTYGVGKDVSFFDWRDYVIQMANQGLIEIMYAES
SALKITSIGWQVLKGDKKIRLTTPVAPADKKKIQKTIKIATEGEVNKDVFTELKKIRYAI
AKEENMPAYIVFSDKTLKLMASVLPTTENEFLSISGVGMNKMEKYGTEFMDVIRKFKAVA
KPRKVPTTNKTFSYYKEGLSPAEIAEKRSLSITTIFSHLSQLYAEGKDINLKKYVTNEII
DKVRVVFNQFNQKNELKPIYEKLNEEVSYSQIRMSITLILKNE
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
gtgataaatcaaacacatactattttaaaaaacaccttcggatatgataattttcgtcct
ttgcaagaggaaattatcaacagaaccatagaaggaaaagatagttttgtattgatgcca
actggaggaggaaaatcgatgtgttttcaaattcctgctttaatttttgatggaattacc
atcgtagtttctccattaatttcgttgatgaaagatcaggttcaggctctaaaatcaaat
ggaatcaaagccgatttttttaatagttctatttctgcagaagaagaaaataacgttatt
accaaagcaataaatggcgatttgcaactcttgtatttatccccagaaaaattaatttct
gttagcaatacttggctaaaacaactcaacataaaattagttgccattgatgaagcacat
tgtgtaagtatgtggggtcatgattttaggcctgaatatacgcaactaaaaatctttaga
aattcgttgccaaatgtgccttttatggcgttgacagcgactgcagataaatctgccaga
aaagatattgaggcgcaattaggcttgaaaaaatcaaaactatttatttcttcctttgat
agaaaaaacttgagtattgaagttcgtggacaagttcaaaaaagaaaaaaactgcaagaa
atcgctaattttatagaaaggcgaaagaatgaaagtggtattatttattgcctaagcaga
aaaaatacggaagaagttgctagttatttaaaacaagaagggcattctgttgcattttat
cacgcaggaatggataatgaagaaagggaaaatacgcaaaccgattttataaatgatgag
acaaaaataattgtagctacaattgcttttggaatgggcattgacaaatcgaacgtgcgt
tttgtaattcattataatttaccaaaaaatttagaaggatattaccaagaaataggaaga
gcaggtagagatggtttgccatcagaaactgtactttattttaatatgagagattttgtt
ttgtatagtcagtttgcagatcaaggagcaaatgttgtgatgcaaaaggaaaaactgagt
agaatgttgcagtttgcagaagcaaaatcttgtagaagaaaaattctattatcctatttt
ggagaacatttatcagaaaattgtggcaattgtgatgtttgcgaaaatccaccaaaaggt
tttgatggcacaattttatcgcaaaaagcactttctggaattgtaagaatgggcgaaaaa
gacggaattacaatgttaattaatgttttacgaggaagtaataatgcagatattcatgag
aaaaattatgcaactttaaaaacttatggagtaggtaaggatgttagttttttcgattgg
cgagattatgtaattcaaatggcaaaccaaggtttaattgaaataatgtatgctgaaagt
tcggctttaaaaataacatccattggttggcaagttttaaaaggcgataaaaaaatacgt
ttaacaacacctgtggcacctgctgataaaaagaaaatacaaaaaacgataaaaattgca
actgaaggtgaagtaaataaggacgtatttacggaacttaaaaaaataagatatgccatt
gcaaaagaagaaaatatgcctgcatatattgtttttagtgataaaactttaaaattaatg
gcaagtgtattgccaacaacagaaaacgaatttttatcaatctctggagttggaatgaac
aaaatggaaaaatatggaactgaatttatggacgtaattcgtaaatttaaagctgttgcc
aaaccaagaaaagtaccaacaacaaataaaacatttagttactataaagaaggattgagt
cctgcagaaattgcagaaaaaagaagtttgtcaattacaactattttttctcatttatct
caattatatgctgagggaaaagacatcaatttaaaaaaatatgtaaccaatgaaattata
gataaagtgcgtgttgttttcaatcaatttaatcaaaaaaatgaactaaaaccaatttac
gaaaaactaaatgaagaggtttcttacagtcaaataagaatgagtatcactttaatttta
aaaaacgagtaa
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