Segatella oris: NCTC13071_00497
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Entry
NCTC13071_00497 CDS
T06067
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
poc
Segatella oris
Pathway
poc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
poc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC13071_00497 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
poc03019
]
NCTC13071_00497 (cshA)
03009 Ribosome biogenesis [BR:
poc03009
]
NCTC13071_00497 (cshA)
Enzymes [BR:
poc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC13071_00497 (cshA)
Messenger RNA biogenesis [BR:
poc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC13071_00497 (cshA)
Ribosome biogenesis [BR:
poc03009
]
Prokaryotic type
rRNA helicases
NCTC13071_00497 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
NadN_nucleosid_C
Motif
Other DBs
NCBI-ProteinID:
VEH14520
UniProt:
A0A3S4X0P5
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All DBs
Position
1:584015..585892
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AA seq
625 aa
AA seq
DB search
MKTFEELGVSEDIRRAIEELGFEHPMPVQEEVIPYLLGNKNDVIALAQTGTGKTAAFGLP
LLQKVDARNRATQAIILSPTRELCVQIADDLKDFSKYINGMNIVPVYGGADIRPQIRTIK
HGVQIVVATPGRLVDLINRGVMELNQVNNVVLDEADEMLNMGFSDSINAIFEQLPDDRNT
LLFSATMSREVEKVAKSYLHDYKEIVVGSRNEGAEHVNHIYYLVHSKDKYLALKRIVDFH
PRIFAIIFCRTKIETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRQHTVQLLVATD
VAARGLDVNDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSISIIHVKEKWKVRQIEKQ
IGKDFIDGELPKPEEICKKQLYKVMDDIMKTDVDEDQIAPYMDDIMRQFEYVDKEDIIKK
MVTVTFGRFLDYYKHAPEIEKPMAGKGSRSERGDRSMRGKVSSGRRQHVAESGYRRLFIN
LGKSDGFYPGEIMQYLNKHVHGRQEVGHIDLLQKFSYIEVPENDAQKVMKALNGTSYKGR
EVRCNDADEDGHGRAGKRGGRSEKSSRGGRQSRNNNERPQRRQRQHEEENETDWRSLIAG
KSIKLKGDEPDFSEEGWARRRPKKK
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaacatttgaagaattgggcgtcagtgaagacattcgccgcgccattgaggaattg
ggcttcgaacatccgatgcccgttcaggaagaagttatcccctatttgttaggcaacaag
aatgatgtcattgcgcttgcacagacaggaacaggcaagactgcagccttcggactgccc
ctcttgcagaaagttgatgcacggaaccgtgcaacccaggccattattcttagtccgacg
cgcgaactctgcgtgcagattgctgatgatttgaaagacttcagcaagtatatcaacggc
atgaacatcgttcctgtatatggaggtgccgacattcgaccacagattcgcaccattaaa
cacggtgtgcagattgttgttgcaacgccgggcagattggtagatcttatcaatcgtggt
gtaatggaactcaaccaagtgaacaatgtggtgctcgatgaggctgacgaaatgctgaac
atgggcttttctgacagtatcaacgccatatttgagcagctcccggacgaccgcaacacc
ctacttttctcggcaacgatgagccgtgaggtggagaaagtggccaaaagctatcttcac
gactataaggaaatcgtcgtaggaagccgtaacgagggcgcagaacacgtgaaccacatc
tactatctcgtacattccaaggacaaatatctggcactgaagcgcatcgttgactttcat
ccacgtatctttgccattatcttctgtcgcacaaagatagagactcaggagattgccgac
aagctgatcaaagacggttataacgccgaagcattgcatggcgacttgagtcagcagcaa
cgtgacctcaccatgcagaagtttcgccaacatacggtgcagctgcttgtagctactgac
gtcgctgcccgtgggcttgacgtgaacgatttgactcatgtcattaactacggactgccc
gatgacatcgaaagttatacgcaccgaagtggccgaacagggcgtgcgggcaagaaagga
acttcaatcagcatcatacatgtcaaggaaaagtggaaagtcagacagatagaaaagcag
atcggcaaggactttatcgatggagaactgccgaaacccgaggaaatctgcaagaaacag
ctctataaggtgatggacgacatcatgaaaactgacgttgatgaagaccagattgcacct
tacatggatgatatcatgcgccagtttgaatacgtagataaagaggacattatcaagaaa
atggtaaccgttacgttcggacgcttccttgattactacaagcatgcacccgaaatagag
aagccaatggctggaaaaggcagccgaagcgagcgtggtgaccgctcgatgcgcggcaag
gtgagcagcggacgacgtcagcatgtggccgaaagtggctatcgccgcctcttcatcaat
cttggaaagagtgacggcttctatcccggtgaaatcatgcaatacctcaacaagcatgtg
catggacgccaggaagtgggacatattgacctgctacagaaattctcttatatcgaagtg
cccgagaacgacgcacagaaagtgatgaaagccctcaatggaacaagctacaaggggcgc
gaagtgcgctgcaatgatgccgatgaagacggacacggaagagccggcaaacgcggtggc
cgcagtgagaaaagcagtcgtggaggccgtcagagtcgcaacaacaatgagcgtccacaa
cgccgtcagcgtcaacatgaagaagaaaacgaaacggattggcgcagtcttattgccggg
aaaagtatcaaactcaaaggagatgaacccgacttcagcgaagaaggttgggcaagaaga
cgcccgaagaagaaataa
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