Pezoporus occidentalis (night parrot): 134156341
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Entry
134156341 CDS
T11716
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pocc Pezoporus occidentalis (night parrot)
Pathway
pocc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pocc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134156341 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pocc03019
]
134156341 (MTREX)
03041 Spliceosome [BR:
pocc03041
]
134156341 (MTREX)
03009 Ribosome biogenesis [BR:
pocc03009
]
134156341 (MTREX)
03016 Transfer RNA biogenesis [BR:
pocc03016
]
134156341 (MTREX)
Enzymes [BR:
pocc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
134156341 (MTREX)
Messenger RNA biogenesis [BR:
pocc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
134156341 (MTREX)
Spliceosome [BR:
pocc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
134156341 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
134156341 (MTREX)
Ribosome biogenesis [BR:
pocc03009
]
Eukaryotic type
Pre-60S particles
Helicases
134156341 (MTREX)
Transfer RNA biogenesis [BR:
pocc03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
134156341 (MTREX)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
Helicase_dom4_arc
Motif
Other DBs
NCBI-GeneID:
134156341
NCBI-ProteinID:
XP_062460282
LinkDB
All DBs
Position
Unknown
AA seq
1031 aa
AA seq
DB search
MADAFGDDLFRVFEQPAAASAARKSKAFVIDGVRTSGKRSEEKSSAVTTARPKRKAEVNH
TENALLGKKRKLEDGLEDDNLADVMPWVRVQAVETVEGCTHEVALPANEEFTGLKPRTGK
AAKEYPFILDAFQREAILCVDNKQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPI
KALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIF
DEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDY
RPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTKGP
SNVFKIVKMITERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAIDCL
SDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINM
PARTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTVGKQL
LKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRTIPEIVERVTKLERQ
YNKILIPNEENVVIYYKIRQQLAKMSKEIEQYVHKPKYCLPFLQPGRLVKVKCEDDNVGW
GVVVNFSKKSNAKPNSAELDSLYVVEVLLYCSKDSLKNSTIESAKPISLDEKGEMQVVPI
LVHLVAAISSVRLYIPKDLRPVDNRQSVLKSIKEVQKRFPDGVPLLDPIDDMGIKDQGLK
KIIQKVEAFEHRMYSHPLHNDPNLETIYKLCEKKAQIAVDIKAARRELKKARTVLQMDEL
KCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGIFNDLSPEQTAALLSC
FVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEENYLNSFRPHLMDVVH
TWANGANFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIK
RDIVFAASLYL
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcctttggagatgatcttttcagagtgtttgagcagcctgccgccgcatct
gccgccaggaagagcaaggcgttcgtcattgatggcgtcaggacatcgggaaaacgatca
gaagaaaaatcctcagcagttacaacagcacggccaaaaaggaaagctgaggtcaatcat
actgaaaatgctcttttgggaaagaagcgaaaattggaagatggattagaagatgacaat
ctggcagacgtgatgccttgggtaagggtacaagctgtggaaactgttgaaggttgtacg
catgaggttgcacttccagcaaatgaagaattcacaggtctgaagccaagaactgggaaa
gctgcaaaagaatatccatttattcttgatgcttttcagagggaagctattctttgtgtc
gataataagcagtctgtgttagtgtcggctcatacatcagctggtaaaactgtttgtgca
gagtatgcaattgccctggctttgagggagaaacagcgtgtaatatttacaagcccaatt
aaagctttgagtaatcagaagtaccgtgagatgtatgaagaatttcaggatgttggtttg
atgactggggatgtcaccattaatcctacagcttcttgtctggtaatgacaactgagatt
ttgagaagcatgctctacagaggttctgaggttatgcgggaagttgcatgggttattttt
gatgaaatccactacatgagagattcggaacgtggtgtggtttgggaagagaccattatt
ttgcttcctgacaatgttcattatgtcttcctttctgcaactattccaaatgctcgtcag
tttgctgaatggatctgccaccttcacaaacagccttgccatgtgatttacacagactat
cgacccactccactgcaacattatatattcccagcaggaggagatgggctccatctggtg
gttgatgaaaacggagatttcagagaagataattttaatacagctatgcaagtgcttaga
gatgcaggagacttagcaaaaggagaccagaaaggcaggaaaggaggaacaaaaggtcct
tcaaatgtttttaagattgtaaagatgatcacggaaagaaatttccaaccagtgattatt
ttcagcttcagtaagaaagactgtgaagcctatgcacttcagatgacaaagttagatttt
aatacagatgaagaaaaaaagatggttgaagaagtgttcaataatgcgattgattgtcta
tcagatgaagacaaaaagcttcctcaggttgaacatgtacttccacttctgaagcgagga
attggtatccatcatggtggtctgcttcctatcttaaaagaaaccatagaaattcttttc
tctgagggcctaataaaggccttatttgccacagagacttttgctatgggaattaatatg
ccagccaggactgtgctatttacgagcgccagtaaatttgatggaaaagatttccgatgg
atatcctcaggagaatacatccaaatgtcaggtcgtgcaggacgcagaggcatggatgac
agaggaatagtaattcttatggtggatgaaaaaatgagtccaacagttggcaagcagctc
ttgaagggttcagctgatcctttaaacagtgcattccacctgacgtacaacatggtattg
aacttgcttcgagtagaggaaattaaccctgaatacatgttagaaaaatccttctatcag
ttccagcattacagaactattccagaaatagtagaaagagtgactaagttagaaagacaa
tacaacaaaatactcattcccaatgaagaaaatgtggtcatatactacaaaatccgacag
cagcttgcaaaaatgagtaaagagattgaacaatatgttcacaaaccaaagtattgcctg
ccatttctacagccaggaagactggtaaaggtgaaatgcgaagatgataacgttggatgg
ggagtggttgttaatttctctaagaaatcgaatgctaagccaaattctgctgaattggac
tcgttatatgtagttgaagtgctactgtactgcagtaaagacagtttgaaaaattctact
attgagtccgcaaagccaatcagccttgatgagaaaggagagatgcaggttgttcctatt
ttggtacatcttgttgcagctatcagcagtgtccgactttacataccgaaagacctgcgg
cctgttgacaacagacaaagtgtgctaaagtctataaaagaagtacagaagcgatttccc
gatggagttccattactagaccctattgatgacatgggcatcaaagatcaaggactgaaa
aaaataatccaaaaagtagaggcatttgagcataggatgtattcacatcctcttcacaat
gatcccaacttggaaaccatatacaaactttgtgaaaaaaaagcacagattgctgtagat
atcaaagcagcaagacgagaactgaaaaaagctagaaccgtcttacaaatggatgaactc
aaatgccgcaagcgtgttttgagaaggctggggtttgccacatcctcagatgttattgag
atgaaagggcgggttgcttgtgaaatcagcagtgctgatgaactactcctgacagaaatg
atgttcaatggtatcttcaatgacttatctccagaacagacagctgcgctactaagctgt
tttgtatttcaagagaattccagtgagatgccaaaactgacagagcagttggcaggacca
cttcggcaaatgcaggagtgtgcaaaaagaattgccaaggtgtcagcagaagcaaaactg
gaaattgatgaagaaaattacttgaattctttcagacctcacctcatggatgttgtccat
acatgggcaaatggtgctaactttgctcacatctgcaaaatgactgatgtctttgaaggc
agcataattcgatgcatgaggaggttggaagaattgcttcggcagatgtgccaagctgca
aaagccatcggaaacacagagctggaaaacaagtttgcagaggggattacaaaaatcaag
agggatattgtctttgctgcaagcctttacctgtaa
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