Pezoporus occidentalis (night parrot): 134160738
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Entry
134160738 CDS
T11716
Symbol
DHX38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
pocc Pezoporus occidentalis (night parrot)
Pathway
pocc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pocc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134160738 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pocc03041
]
134160738 (DHX38)
Enzymes [BR:
pocc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
134160738 (DHX38)
Spliceosome [BR:
pocc03041
]
Complex C
Other components
Step II factors
134160738 (DHX38)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
WHD_HA2
AAA_19
nSTAND3
Flavi_DEAD
T2SSE
nSTAND_NTPase5
PhoH
Microtub_bd
Sigma54_activ_2
SRP54
AAA_16
AAA_30
AAA_7
Toxin_trans_Wo
Motif
Other DBs
NCBI-GeneID:
134160738
NCBI-ProteinID:
XP_062468998
LinkDB
All DBs
Position
Unknown
AA seq
1230 aa
AA seq
DB search
MAMAEGSLHRLAGTTPDGEAGGLVLRQRSAAAELHVFKAPAPRGSLLGLDVLAAQKRRER
GEEEVSRKRSRVASHGEDREESRGEAGNAEEDSDEGTRSSHGVHRHYRSTHVESPSYTGG
VSEEFWERNRQRERDRRAHGVFASSKEEKQQKKERSRDRDHDRKRHREERDRSRHSSRSD
RDSSSERSSRRSEPESPRHRPKDAATPSRSGWEEDDTGSSSARRSQWESPSPMPSSRDSE
RSHRPSSQRDTDRRDRDRSVRSRYSDKTPLPTPSYKYNEWADDRRHLGSTPRLSRGRGRR
TDGEEGIAFETEEERQQWEDDQRQADRDWYMMDEGYDEFHNPLACSSDEYVKKREQHLHK
QRQTRISAQRRQINEDNERWETNRMLTSGVVHRIEIDDDFEEDNSAKVHLLVHNLVPPFL
DGRIVFTKQPEPVIPVKDATSDLAIIARKGSQLVRKHREQKERKRAQHKHWELAGTKLGD
IMGIKKEDEKDEMVTEDGKVDYKTEQKFAEHMKEKNEASSEFAKKKSILEQRQYLPIFAV
QQELLSILRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRV
SEEMGVRLGEEVGYAIRFEDCTSENTLIKYMTDGILLRESLREADLDNYSAIIMDEAHER
SLNTDVLFGLLREVVARRSDLKLVVTSATMDADKFASFFGNVPIFHIPGRTFPVDILFSK
TPQEDYVEAAVKQALQVHLSGAPGDILIFMPGQEDIEVTSEQIIEHLEELEKAPALAVLP
IYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGM
DALQIYPISQANANQRAGRAGRTGPGHCFRLYTQSAYKNELLTTTVPEIQRTNLANVVLL
LKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRLMVEFPLDPALSK
MLIVSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQVREKFAVPESDHLTYLNVYLQ
WKNNRYSTLWCNQHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTDWDVVRKCICAAY
FHQAAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVD
GEWLAELGPMFYSIKHAGKSRQENRRRAKEEVSAMEEEMALAEEQLRARREEQERRNPLG
SARSTKIYTPGRKEQGEPLTPRRTPARFGL
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atggcgatggccgaggggtctctgcaccgcctggcggggaccaccccggacggcgaggcc
ggcgggctggttctgcggcagcgcagcgccgccgccgagctgcacgtcttcaaggcgccg
gcaccacggggttccttgctgggcctggatgtgctggcggcccagaagcggcgggagcga
ggggaggaggaggtgagcaggaagcggtcccgggtcgcctcgcacggggaggaccgggaa
gagagccgcggcgaggcgggcaacgccgaggaggacagcgacgagggcacccggagcagc
cacggcgttcacaggcattaccgttctacccatgtggaatcaccttcctacacggggggc
gtcagtgaggagttttgggaacgcaaccggcagcgtgaaagggaccgtcgggcacatggt
gtctttgcctcctccaaggaggagaaacagcagaagaaggaacgcagtagggaccgggac
catgatcgcaaacggcaccgtgaggaacgggacagaagtcgtcacagcagcaggtcagac
agggacagctcatcagagcgcagcagcaggaggagtgaaccagagagtcccaggcatcgg
cccaaagatgcagccacgccgtctcgctctggctgggaggaggatgacactggctccagc
agtgctcgtcgctcacagtgggaatctccctcgcccatgccttcctcccgagactcggag
cgcagccaccggccatcatcacagcgggacacggaccggagagaccgggacaggtctgtg
aggagcaggtactcagataagacaccattgcccacaccatcgtacaaatacaacgagtgg
gctgatgaccggagacacctcgggtctacaccacggctgtccagagggagaggccggcgc
acagacggggaggagggcatcgccttcgagacggaggaggagcggcagcagtgggaggac
gatcagcggcaagctgaccgggactggtacatgatggatgagggctacgacgagtttcac
aaccccttggcctgctcctccgacgagtacgtgaagaagcgggagcagcatttgcacaag
cagaggcagacgcgcatctcagcgcagcggcggcagatcaacgaggataacgagcgctgg
gagacaaatcggatgctgaccagcggtgtggttcatcggattgaaatcgatgacgatttt
gaggaggataactcagctaaagtgcatttgttggtgcacaacctggtgccccctttccta
gatggaaggattgtcttcaccaagcagccggagccagtcatccctgtcaaggacgccacc
tcagatttggccatcatagcccggaaaggcagccagttggtgcgaaagcacagggagcaa
aaggagcgtaagagggctcagcataagcactgggagctggcaggcacaaaactgggagac
attatggggatcaagaaagaagacgagaaggatgagatggtgacagaagatggcaaagtg
gattacaagactgagcagaagtttgctgagcacatgaaagaaaaaaatgaagccagcagc
gagtttgccaagaagaaatcaatcctggagcagagacagtatctgcccatctttgctgtg
cagcaggagctgctctccatcctcagagacaacagcattgtgattgtggtgggggagacg
gggagcgggaagacgacacagctgacacagtacctgcatgaggatgggtacaccgactac
ggcatgattggctgcacgcagccccgcagggtggcagccatgtccgttgccaagcgggtc
agtgaggagatgggcgtgcggcttggggaggaggtgggctacgccatccgctttgaggac
tgcacgtccgagaacacgttgatcaaatacatgacagatgggatccttcttcgtgagtcc
ctgcgagaggctgacctggacaactacagtgctatcatcatggatgaggcacatgagcgc
tcgctcaatactgacgtgctctttggcttgcttcgggaggtggtggcccgacgttcagat
ctgaagcttgttgttacctcagccaccatggatgcggataagtttgcctccttctttgga
aacgttcccattttccacattcctgggcgcaccttccctgttgatattcttttcagcaag
accccacaagaggattatgtggaagctgcagtgaaacaagccctgcaggtccatttgtct
ggtgctcctggagacatcctcatcttcatgcctggccaggaggacatagaggtgacctca
gagcaaatcattgagcacctcgaagagctggagaaggcgcctgcgctcgctgttctgcct
atctattcacagctgccatcggacttgcaggccaagattttccagaaggctccagatggg
gtcaggaagtgcattgttgccaccaacattgcagagacctcactaacagtggatggcatc
atgtttgtgattgactctggctactgcaagttgaaggttttcaacccccgtataggcatg
gatgcactgcagatctaccccatcagtcaagccaatgccaaccagagggcaggccgagct
ggccgaacgggcccaggccactgcttcaggctctacacccagagtgcctacaagaatgag
ctgctgacaaccacagtgcctgagatccagcgcaccaaccttgccaatgtggtgcttttg
ctcaagtccctgggtgtgcaggacctgctgcagttccacttcatggatccgccccctgag
gacaacatgcttaactccatgtatcagctgtggatcctgggagccctggataacactggt
ggtctgacctcaacgggacgtctcatggtggagtttccactggatcctgcactctccaaa
atgctcattgtctcctgtgacatgggttgcagctccgagatcttgcttattgtctccatg
ttgtctgtacctgccatcttttatcggcctaagggccgagaggaggagagtgaccaagtg
cgggagaaatttgctgttcccgagagtgatcacttgacttacctgaatgtttacctgcag
tggaagaacaacaggtattccacattgtggtgcaaccagcacttcatccatgccaaggcc
atgcggaaggtgcgggaggtgcgtgcccagctcaaggacatcatggtgcagcagcggatg
agcctggcatcctgtggtactgactgggatgttgtcaggaagtgcatctgtgctgcgtat
ttccatcaagctgcaaagcttaagggcattggggagtatgtgaacatccgtacgggcatg
ccttgccacctgcaccccacaagctctctgtttggcatgggctacacaccagactacatt
gtgtatcacgagctggtcatgaccaccaaggaatacatgcagtgtgtcaccgctgtggat
ggagagtggctggcagagctgggccccatgttctacagtatcaagcatgctggcaagtca
cgtcaggagaaccgccgccgtgccaaggaggaagtgtctgccatggaggaggagatggca
ctggccgaggagcagctgcgtgcccgccgggaggagcaggagcgccgcaaccctctgggc
agtgccagatctactaaaatctacacccctgggcggaaggagcagggcgagcccctgaca
ccacgacgcaccccagcacgctttggcctctaa
DBGET
integrated database retrieval system
