Pezoporus occidentalis (night parrot): 134163967
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Entry
134163967 CDS
T11716
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
pocc Pezoporus occidentalis (night parrot)
Pathway
pocc04382
Cornified envelope formation
pocc04510
Focal adhesion
pocc04512
ECM-receptor interaction
pocc04518
Integrin signaling
pocc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pocc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134163967 (COL4A1)
04518 Integrin signaling
134163967 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
134163967 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
134163967 (COL4A1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
134163967 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pocc04147
]
134163967 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
pocc00536
]
134163967 (COL4A1)
Exosome [BR:
pocc04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
134163967 (COL4A1)
Glycosaminoglycan binding proteins [BR:
pocc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134163967 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
134163967
NCBI-ProteinID:
XP_062475269
LinkDB
All DBs
Position
Unknown
AA seq
1669 aa
AA seq
DB search
MRLWLGFGLLLSAELSAVSAAGCSGCGKCDCSGVKGQKGERGLPGLQGVIGFPGMQGPEG
PPGPPGLKGDTGEPGLPGTKGTRGPPGVSGFPGNPGLPGIPGQDGPPGPPGIPGCNGTKG
ERGPVGPPGLPGLTGSIGPPGPPGMKGDPGEVIGLLPPSLLKGDKGFPGQPGLPGPPGNP
GFQGPMGPQGPPGEPGPPGPPGLPGEKGYMGLGFQGPKGEKGEQGVRGPPGPPGPAPHMK
EKGSEIIRGEKGDPGEKGEQGVPGLPGSGFKGEKGEPGKPGPRGKPGKDGEPGPKGEAGL
PGGFGIPGRPGEPGAKGDKGERGFPGPPGRIIDTGPVDMFGEKGEPGLSGLPGLKGQKGE
KGFPGIQGIPGPPGRPLPDRVGSPGVPGERGEKGEKGSPGFALPGPPGRDGFPGPPGLPG
PPGPPGKTDGIDQCQQGEPGAPGSPGLPGRDGFPGEMGEKGDKGESCALCDKVGPPGLPG
PQGPPGPAGFPGQVGFKGDRGLPGLDGLPGVPGPPGTPGLMGSPGAKGEPGDFSYDSILK
GEKGDPGFPGQPGIPGREGLPGKDGLPGLQGQKGAPGTAGLKGERGPPGQPGFPGVRGER
GFPGPPGIGAAGLPGDKGDRGFAGTPGLPGLPGAKGEAGRTVTLPGPPGADGLPGPPGFP
GPQGDKGDPGLPGRPGLPGEKGAIGQPGIGFPGPPGPKGFQGQPGSPGLPGTPGTPGLDG
LPGVPGLQGQKGEPGVGIPGPKGLPGPPGPAGIPGEKGSPGLPGLRGEQGFPGIPGQQGF
RGDPGLPGLQGSQGPPGAPGLGPQGSPGPAGQPGPQGPPGFPGIKGERGFPGIPGLDMPG
PKGDKGSPGQPGVPGSVGLPGLPGPQGAIGLKGSSGAKGEMGVMGTPGLPGTPGPVGDRG
LPGEKGSQGFKGVVGPQGDPGVKGDKGEAGLPGKPGTMDTMDMVSLKGQKGDQGEKGDHG
PTGEKGLRGEYGEPGIPGKDGEPGTPGQPGPKGDQGPPGFPGDPGVPGQKGSVGEMGLPG
TPGEKGLPGVPGSPGTPGFPGQKGEKGDKGAPGFPGIGFPGSPGEKGEPGRTGSPGLSGD
KGEKGSAGIPGMPGAPGPKGSPGIAGFPGNPGRHGEKGEKGLPGLAGIPGLKGEPGEPGL
PGPAGSIGQKGEPGYDGIPGAAGAKGEQGVPGRGVPGFPGAKGDKGAKGDVGFPGSPGSP
GIPGLKGEPGYAGPPGPKGNQGFPGLPGSAIEGPKGDRGPQGQPGLPGLPGPTGPPGPPG
LKGAKGEQGSNGWPGTPGSPGVKGDPGFQGLPGSPGLPGDIGQKGDLGPPGVPGVPGPKG
SPGFPGLKGERGDQGLPGSKGLQGPPGPPGAFQLVKGDPGLPGPVGPVGLKGFPGLPGPK
GQQGVTGPSGVPGPPGSPGFDGKPGQKGEAGPYGPPGPRGFPGPPGPEGLPGAMGPPGAP
SVAHGFLVTRHSQTTEEPACPFGTRLIYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTM
PFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGDSIRPFISRCSVCEAPAMVIAV
HSQTIQIPPCPEGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRG
TCNYYANAYSFWLATIERNEMFKKPTPSTLKAGDLRSNVSRCQVCMRKT
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atgcggctctggctgggcttcgggctgctgctgagcgccgagctcagcgccgtgtctgcc
gcgggttgttccggctgtggaaaatgtgactgcagtggagtaaaagggcaaaaaggagaa
agaggcttgccgggactacagggtgtgattgggtttcctggaatgcaaggacctgaaggt
ccccctgggccaccagggcttaagggtgatactggagaaccaggactgccaggaacaaag
ggaacaaggggtcccccaggagtatcaggcttcccaggaaacccaggccttcctggcatt
cctggacaagatggccctcctggtccacctggcattccaggatgtaatggcacgaagggt
gaaagaggtcctgtaggtcccccaggtttaccagggctgactgggagcataggaccccca
ggacctcctggaatgaagggagatccaggtgaagtgattggtcttttacctcctagtctg
ctaaaaggtgataaaggctttcctggccaacctggactacctggtcctcctggaaatcca
gggtttcaaggaccaatggggccacaaggcccaccaggagagccaggtcctccagggcca
ccaggactcccaggtgagaagggctatatgggcttgggctttcagggtcccaaaggtgaa
aagggagaacaaggggtaaggggccccccaggcccaccaggaccagcaccacatatgaaa
gaaaaagggagtgaaattataagaggagaaaagggtgatccaggtgaaaagggtgaacag
ggagttccaggattgccaggttcaggtttcaaaggtgaaaagggcgaacctgggaagcct
ggtccacgtggaaagccaggaaaagatggtgagccaggacctaaaggagaagccggtttg
cctggtgggtttgggattccaggacgacccggggaacctggtgccaagggtgacaaaggt
gaacgaggttttccaggacctccaggaagaattatagatactggaccagtagatatgttt
ggtgaaaaaggagagcctggactttcaggtttgcctgggctgaaaggtcaaaaaggtgaa
aaaggtttccctggtatacaaggaatcccaggacctccaggtcgtccactgccagacagg
gtaggatcacctggtgtccctggagagagaggtgaaaaaggtgaaaagggttctccagga
ttcgctttgcctggacccccaggaagagatggtttcccaggtcccccagggttgcctggc
ccaccaggtcctccaggcaaaacagatggaatcgatcaatgccagcaaggggaacctggt
gcaccaggtagtcctggacttccagggagagatggatttccaggagagatgggagagaaa
ggtgacaaaggtgaatcttgtgccttatgtgataaagtaggacctcctggacttccagga
ccacaaggaccaccagggccagcaggttttccagggcaagtgggtttcaagggtgacaga
ggcttacctggacttgatggccttccaggggtacctgggccccccggcactccaggactt
atgggcagccctggggcaaaaggagaaccaggagatttttcttatgattctatcctgaaa
ggtgaaaagggagatcctggtttcccaggacaaccaggtattcctggaagagaaggatta
ccaggaaaagatggattgccaggtctccagggtcaaaaaggagcaccgggtacagctggc
ttgaaaggagaacgtggtccccctggccaacctggattccctggagtacgtggtgaaaga
ggttttcctggccctcctgggataggcgctgcagggttacctggtgacaaaggagacaga
ggctttgctggaaccccaggtttaccaggccttccaggagcaaaaggcgaagcaggacga
actgtaacactccctggacctcctggcgcagatggccttcctgggccgcctggttttcct
ggaccccaaggtgacaaaggggatcctgggcttccaggtagacctggccttccaggagaa
aaaggggctattgggcagccaggtatagggttccctggacctccaggacccaaaggtttc
caaggtcagcctggctcacctggtcttccggggaccccaggaacccctggcctggatggc
ttgccaggtgtaccaggtttacaaggtcaaaaaggtgaacctggtgtaggaatccctggc
cctaaaggattgccaggccctccaggcccagctggcatccctggagaaaagggaagtcca
ggactgcctggtttacgtggtgagcaaggctttcccggcatacctggacagcaaggattc
agaggcgacccgggcctcccaggactgcaaggctcgcagggccctccgggcgcaccgggg
ctgggcccacagggatcgccgggacccgctgggcagccaggaccacagggaccaccaggg
tttcctggaataaaaggagaaaggggctttcctggtatcccaggtctagatatgccagga
ccaaaaggggataaaggtagcccgggccagcctggagtaccagggtctgtggggttacct
ggcctgccaggtccgcagggggccattggactcaaaggatcatcaggagccaaaggagaa
atgggagttatgggaactcctggattgccgggaactcctggaccagttggagatcgaggg
ttgcctggtgaaaaaggtagccaaggtttcaaaggtgtagttggtccacagggtgatcct
ggtgtcaaaggagataaaggtgaagctggccttccaggaaaacctggaacaatggacacc
atggatatggttagtctcaaaggccaaaagggagatcaaggagaaaaaggggaccatgga
ccaacaggagaaaaagggttacgtggggaatatggagaaccaggaattccagggaaagat
ggtgaacctggtactccaggacagccaggaccaaaaggtgatcagggccccccaggattc
ccaggggatccaggagttccaggacaaaaaggatcggttggtgaaatgggtttgccagga
acacctggagaaaagggtctgccaggtgtaccaggttcaccaggcacaccagggttccct
gggcaaaaaggtgaaaaaggagacaaaggagcaccaggttttcctggaattggctttcca
gggtctcctggtgaaaagggagaaccaggaagaacgggtagtccaggtttatctggagat
aagggtgaaaagggtagtgcaggaattcctggaatgccgggtgccccaggtcccaaagga
tcccctggcatagcaggatttccaggcaacccaggccgccatggagaaaagggtgaaaaa
ggacttcctggtttagctggcattccaggtttaaaaggagaaccaggtgaacctggcctt
ccaggtcctgctggttccattggacagaagggtgagccaggttatgatgggattccaggt
gctgccggtgcaaagggtgaacaaggtgttccaggtagaggagttccaggatttcctggt
gcaaagggagataaaggtgcaaaaggtgatgtgggctttccaggatccccaggaagtcca
gggatcccaggcctgaaaggagaaccaggatatgctggtccaccaggccctaagggcaac
caaggttttcctggactaccaggaagtgcaattgagggccctaaaggagacagaggaccc
caaggccaacctggccttccaggtttaccaggtccaacagggccaccaggacccccaggt
ctgaaaggggccaaaggagagcaggggagcaatggctggcctgggactcctgggagtcca
ggagtcaaaggtgatccaggtttccagggactgccaggtagccctggtttaccaggtgat
attggtcaaaagggtgatctgggacctccaggagttccaggtgtaccaggtccaaaagga
tctcctggcttcccaggccttaagggtgaacgaggtgatcaaggtctccctggatctaaa
ggtttacaaggcccaccaggcccaccaggtgcgtttcagcttgttaaaggcgatcctggc
ttacctggacctgtaggaccagttggtctcaaaggattcccaggacttccaggtcccaaa
ggacagcaaggggtgacaggaccttcaggtgtacccggaccacctggtagtccagggttt
gatggtaaacctgggcagaaaggagaagctggtccttatggtcccccagggcccagagga
ttccctggtccacctggccctgaaggtttgcctggggctatgggcccaccaggtgcacca
tctgttgctcacggcttccttgttaccagacacagtcaaaccactgaagaaccagcgtgt
ccatttggaacaaggctgatttaccatggctactccttgctttatgtacaaggcaatgag
agagcccatggccaagatttgggcacggcgggaagctgtcttcgtaaatttagtaccatg
cctttcttattctgcaatatcaacaacgtatgtaactttgcatcaaggaatgactattcc
tactggctgtccactcctgaacccatgccaatgagtatggctcctatcactggtgatagt
atcagaccattcatcagcagatgttctgtgtgtgaagctcctgctatggtaatagccgtt
cacagtcaaacaattcaaataccaccgtgtcctgaaggctggagttcactttggattggt
tactcttttgtcatgcacaccagtgctggtgcggagggttctggccaggccctggcgtct
cctggttcctgcctagaggagtttcgcagcgctcccttcattgaatgccatggccggggc
acctgcaattattatgcaaatgcttacagcttctggcttgccactatagaaaggaatgag
atgttcaagaaaccaactccctcaactttgaaagcaggggatctgcgctcaaatgttagc
cgttgtcaagtctgtatgagaaaaacataa
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integrated database retrieval system
