Pezoporus occidentalis (night parrot): 134166972
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Entry
134166972 CDS
T11716
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
pocc
Pezoporus occidentalis (night parrot)
Pathway
pocc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pocc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134166972 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pocc03041
]
134166972 (DDX42)
Enzymes [BR:
pocc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
134166972 (DDX42)
Spliceosome [BR:
pocc03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
134166972 (DDX42)
Complex B
134166972 (DDX42)
Complex C
U2 SnRNP specific factors
134166972 (DDX42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
DUF460
Motif
Other DBs
NCBI-GeneID:
134166972
NCBI-ProteinID:
XP_062481133
LinkDB
All DBs
Position
Unknown
AA seq
943 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAITPGKKEEPKLSQQSHSAFGTAGSSAAFAKSVPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFHSKSADSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKEKKNAKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQ
VRSIANHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKV
ISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENSDRGNNNSVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLNNQ
KTGSSAAGASGWTSAGSLNSVPTSSAQQNTASPESPLAATAAAKGVPGFTSTGSLSSVPT
FPSVGGQGFNNTSASTNSREGGGGTGVATTGGGGGGGGGGGAVVRERYNDSRPGRHNEAP
RRGEGGGRYNDVQRHGEGAGRHSDVYRHGESRHGDNHRHGESRHFTDVGAGNRNNGDSRN
SSEGRNNENRNGDNRKEAANRDNKTDGFAVPEPPKRKKSRWDS
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaacaaaggtggacctggtactaagagaggctttgggtttggtggctttgcc
ataacacctgggaagaaggaggagccgaagctctctcagcagtctcacagtgcttttgga
acagccggttcttctgctgcatttgcaaaatcagtacctcctcagctgccttctttctac
aaaattgggtcaaagcgagccaactttgatgaagagaatgcgtactttgaggatgaagag
gaagattccagcaatgtggatttgccatacattcctgcagagaattcccccactcgccag
cagtttcattccaaatcagcagactctgacagcgatgatgatcctctggaggcattcatg
gctgaagtggaggatcaagctgctcgagacatgaagagactcgaagataaagacaaggaa
aaaaagaatgctaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcgctacatggctgaaaaccccactgctggtgtggtgcaagaagaggaagaggataac
ctggagtatgatagtgatgggaatccaattgcaccgtccaaaaaaatcattgaccctctt
ccacctatcgatcactcagagattgaatatccaccatttgagaagaatttctatgatgag
catgaggagatcacaagtctcacgccgcagcaagtggtagagctacgtcataagctaaat
ctccgggtctctggtgctgctcctccaaggcctggcagtagttttgctcattttgggttt
gatgagcagcttatgcatcaaattaggaaatctgagtatacccagcccactcctatacaa
tgtcagggtgttccagttgcactaagtggcagagatatgattgggatagctaagactgga
agtggaaaaacagcagccttcatctggccaatgctgattcatatcatggatcaaaaggag
cttgagccgggggatggtcccattgcagtcattgtctgcccaaccagagagctttgccaa
cagatccactcggaatgtaagcgctttggtaaggcatataatctgcgctctgtagctgtg
tatggaggaggaagcatgtgggagcaagccaaagccctccaggagggggcagagatagtt
gtctgcacaccaggtcgtttgattgatcatgtgaaaaagaaagctacaaaccttcaaaga
gtcacttatcttgtgtttgatgaagctgacagaatgtttgatatggggtttgaatatcag
gtcagatccatcgcaaaccacgtccgtcctgacaggcagaccctcttgttcagtgccact
ttccgtaagaagattgagaaattggcccgggatattctgatcgaccccatccgagttgtg
cagggagacattggagaggccaatgaagatgttactcaaattgtggagattttcccctct
ggccctagcaagtggaactggctgactcgacgcctcgtggagttcacgtcttctggcagt
gttctcctgtttgtcaccaagaaggcaaatgcagaagagttggccaataacctcaagcag
gaggatcataacttgggactgcttcatggtgacatggaccagagtgagaggaataaagtc
atttcagaatttaagaagaaggggatcccgatactggtagctactgatgtggcagctcgt
gggttagatattccttccattaagactgtcatcaactacgacgtggctcgagacatagat
acccacacccatcggatcggtcgcaccggcagagcgggcgagaagggagttgcctacact
ctgctgactcccaaagacagtaacttcgctggtgatcttgtcaggaacctagaaggggct
aatcagcatgtttccaaggaactgttggatttagcaatgcagaatccatggtttcgaaaa
tcacgtttcaaaggaggaaaaggcaagaagctgaatattggtggtggtggcttaggatac
cgtgaacgtcctggtctgggatcagaaaactctgaccgtggaaacaacaacagcgtgatg
agtaactacgaggcgtacaagccatccactggggcaatgggagacaggcttacagcaatg
aaagcagcttttcagtcccagtacaagagccactttgttgctgcaagcttaaacaatcaa
aagactggtagctctgctgctggggcaagtggctggaccagcgccgggagcttgaactcg
gtaccgacgagttcagcccagcaaaacactgcaagccctgagagcccacttgcagccacc
gcagcagcaaagggtgtgccaggcttcaccagcacggggagtttgagtagcgttcccacc
ttcccaagcgtcgggggacagggcttcaacaacacaagtgccagcaccaacagtcgagag
ggcggcggcggtaccggtgttgccaccactggtggtggtggtggcggcggcggtggcggc
ggtgccgtggtcagggaacggtacaacgacagccggcccggtcggcacaacgaagccccg
cgccgtggagaggggggtggtcgctacaacgacgtgcagcgccacggggaaggagctggt
cgccacagtgacgtttaccgccacggagagagccgccacggcgacaaccatcgccacggg
gagagccggcacttcactgacgtgggtgctgggaaccgcaataacggtgacagcaggaac
agcagcgaggggaggaacaacgagaacaggaatggtgacaacaggaaggaggccgccaac
cgagacaacaaaacagatgggtttgctgtcccagagcccccaaagcggaagaagagccgg
tgggacagttaa
DBGET
integrated database retrieval system
