Pezoporus occidentalis (night parrot): 134167792
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Entry
134167792 CDS
T11716
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pocc Pezoporus occidentalis (night parrot)
Pathway
pocc03013
Nucleocytoplasmic transport
pocc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pocc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
134167792 (UPF1)
03015 mRNA surveillance pathway
134167792 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pocc03019
]
134167792 (UPF1)
Enzymes [BR:
pocc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
134167792 (UPF1)
5.6.2.5 RNA 5'-3' helicase
134167792 (UPF1)
Messenger RNA biogenesis [BR:
pocc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
134167792 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
134167792 (UPF1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
SRP54
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
134167792
NCBI-ProteinID:
XP_062482813
LinkDB
All DBs
Position
Unknown
AA seq
1120 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGQAGPGQGQG
PPGVGQGPPVPIEAQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDSSTDYGDEIAIELRSSVGAPVEVTHNFQVDFVWKST
SFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYA
VKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTG
LKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRAL
KRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLI
LVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYE
GSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITT
KLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFII
LSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVL
VEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNM
YFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRG
GRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELS
QDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtatggccccagctcgcagaccctcaccttcctggacaccgaggag
gccgagctgctgggcgccgacacgcagggatccgagttcgagttcaccgacttcactctc
cccagccagacccaaaccccgcccgggcccgggcaggcggggccgggacagggccaaggg
ccccccggagtggggcagggaccgccagttccgatcgaagcgcaggtgaatggacctgat
ggcattctccagaatggagctgtggatgataatgtggctaaaaccagccagcttctggca
gagttgaattttgaagaagatgaagaagatacttattacacaaaggaccttcctgtgcat
gcttgcagttactgtggcatccatgaccctgcttgtgtggtttactgcaacaccagcaaa
aagtggttctgtaacgggcgtggaaatacatctggcagccacattgttaatcatcttgtg
agagcgaagtgcaaggaggtgactctccataaggatgggcctctaggagagaccgtcttg
gaatgttacaactgtggatgtcgtaatgtgtttctcctgggctttattccagctaaggca
gactccgtggtggttttgctgtgcaggcagccatgtgccagccagagcagtttaaaggat
attaactgggacagttcacagtggcagcctcttatccaagatcgttgtttcctttcatgg
ctggtgaagattccatctgaacaggagcagttgagagcccgtcagattacagctcagcag
attaacaaactggaagaactttggaaggaaaatccatctgcaacccttgaggacttggaa
aagcctggtgttgatgaagaaccacagcatgttctgcttagatatgaagatgcttatcaa
taccaaaatatctttggtcctctggtcaagcttgaggcagactatgacaagaaactcaag
gagtctcagacccaagataacatcacagtcagatgggacctgggcttgaacaagaaaaga
attgcctatttcactttgccaaagactgactcggatatgcgtcttatgcaaggagatgag
atctgtctgaggtataaaggagacctggcccctttgtggaaaggaattggtcatgttatc
aaagtacctgatagttctacagattatggtgatgagatagccatcgagctgaggagcagc
gtgggagcgcctgtggaagtcactcataacttccaagtggattttgtatggaagtcaact
tcatttgacagaatgcagagtgctttaaaaacattcgctgtggatgaaacctcagtgtct
gggtacatctatcacaagctattaggtcatgaggtggaagatgtaattattaaatgccag
ttgccaaagcgctttaccgcacaaggacttcctgatctcaaccattctcaggtttatgct
gtgaagactgtcctgcagcgtcctctgagcctcattcagggtcctcctggtaccggaaag
acagtgacatcagccacaattgtctatcatctggctagacagggcaacgggcctgtgtta
gtctgtgctccgagtaacattgctgtggatcagttgactgagaagatccatcaaactgga
ctgaaagtggttcgtctgtgtgctaaaagtcgtgaggcaattgactctcctgtctccttc
ttggcattgcataaccagatcaggaacatggatagcatgccagaacttcagaaactgcag
cagcttaaagatgaaactggagagctgtcatctgctgatgagaaacgttaccgggcactg
aaacgaacagcagagcgggagttacttatgaacgcagatgtgatctgttgcacctgtgtg
ggagctggtgacccaaggcttgcaaagatgcagttccgctctattctgatcgatgaaagc
acacaggccactgagccagagtgcatggtgccagtggtgctgggagcaaagcagcttatt
cttgtaggtgaccactgccagcttggtcctgttgtgatgtgtaagaaagctgctaaggct
gggctgtctcagagcctcttcgagaggctggtggtgctggggatccggccgatccgcctg
caggtgcagtaccgcatgcatcccgcacttagcgctttcccatccaacatcttctatgag
ggttcactccagaatggtgtcactgcagcggaccgtgtgaagaaagggtttgatttccag
tggccacagccagataaaccaatgtttttctacgttacacaaggacaggaagaaattgcc
agctcgggcacctcttacttaaacaggacggaagctgccaatgtggagaagataactaca
aagctattgaaagctggtgccaaaccagatcagattggcattataaccccttacgaaggg
cagcgatcctatctggtgcagtacatgcagttcagtggctccttgcatacaaagctctac
caggaagtggaaattgcaagtgtggatgccttccagggacgagaaaaggactttattatc
ctttcttgtgtgagggccaatgagcaccaagggatagggtttctgaatgacccccggcgt
cttaatgtagctcttacaagagcaaggtatggagtaattattgttgggaacccaaaagct
ctgtctaaacagccactctggaatcacctgctgaattactacaaggagcagaaggtgctg
gtggagggaccactgaacaacctccgggaaagccttatgcagttcagcaagccccggaag
ctcgtcaacaccatcaacccaggtgcccgtttcatgactactgccatgtatgatgcacgg
gaggctattattccaggatctgtctatgaccgcagcagtcaaggccgcccatccaacatg
tacttccagacccacgaccagatcgggatgatcagtgccggccccagccacgtcactgcc
atgaacattcccatccctttcaacctggtgatgccaccgatgccaccgccggggtacttc
ggccaagcaaacggaccagccgcaggacgtggggcaccaaaagggaagactggtcgtggt
gggcgccagaaaaatcgttttgggattcctggaaccagtcagtcaaaccttccaaatagt
caagcgagccaagacgtggtttcccagcccttctcccagggtccactgactcaggggtat
atctccatgagtcagccatcacagatgagtcagcctgggctctcccaacccgaattatca
caggacagttaccttggtgatgagtttaaatctcagattgacgtggcgctgtcacaggac
tctacttaccagggtgaacgtgcatatcaacatggtggagtgacgggactgtcacagtat
tag
DBGET
integrated database retrieval system
