Pezoporus occidentalis (night parrot): 134168949
Help
Entry
134168949 CDS
T11716
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain
KO
K19719
collagen type II alpha
Organism
pocc Pezoporus occidentalis (night parrot)
Pathway
pocc04510
Focal adhesion
pocc04512
ECM-receptor interaction
pocc04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
pocc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134168949 (COL2A1)
04518 Integrin signaling
134168949 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
134168949 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pocc00536
]
134168949 (COL2A1)
Glycosaminoglycan binding proteins [BR:
pocc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134168949 (COL2A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
134168949
NCBI-ProteinID:
XP_062485103
LinkDB
All DBs
Position
Unknown
AA seq
1485 aa
AA seq
DB search
MPGRRPLRLAAALAILLLAVVAAQDRDLPEAGSCLQDGQTYSDKDVWKPEPCRICVCDTG
TVLCDDIICEELRDCPSPEIPFGECCPICPAEQPSGQPGPKGQKGEPGDIKDVVGPRGPP
GPQGPAGEQGQRGDRGEKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQ
MAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEPGEPGAAGPMGPR
GPPGPPGKPGDDGETGKPGKSGERGAPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEA
GAPGAKGESGSPGENGSPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPGPVGPA
GAPGFPGAPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGAPGNPGTDGIPGAKGSA
GAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGETGPAGPQGAP
GPAGEEGKRGARGEPGAAGPVGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPAGLAGPK
GATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPTGAPGEDGRPGPPGPQGARGQPGVM
GFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPVGERGEQGAPGPS
GFQGLPGPPGPPGESGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLP
GTPGTDGPKGATGPAGPNGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKD
GARGLTGPIGPPGPAGPNGEKGESGPPGPSGAAGARGAPGERGEPGAPGPAGFAGPPGAD
GQPGAKGEQGEPGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAA
GRVGPPGPNGNPGPPGPPGSAGKDGPKGARGDAGPPGRAGDPGLQGPAGPPGEKGEPGED
GPAGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSAGDRGPPGPV
GPPGLTGPAGEPGREGNPGSDGPPGRDGAAGVKGDRGETGPVGAPGAPGAPGAPGPVGPT
GKQGDRGETGAQGPMGPSGPAGARGMPGPQGPRGDKGETGEAGERGLKGHRGFTGLQGLP
GPPGPSGDQGAAGPAGPSGPRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGEPGPAGPP
GNPGPPGPPGPPGTGIDMSAFAGLGQTEKGPDPIRYMRADEAGSNLRQHDVEVDATLKAL
NNQIESIRSPEGSKKNPARTCRDIKLCHPEWKSGDYWIDPNQGCTLDAIKVFCNMETGET
CVYPNPRSIPKKNWWTSKTKDKKHVWFAETINGGFHFSYGDEDLAPNTASIQMTFLRLLS
TEGSQNVTYHCKNSIAYMDEETGNLKKAILIQGSNDVEIRAEGNSRFTYSVLEDGCTKHT
GKWGKTVIEYRSQKTSRLPIVDIAPMDIGGAEQEFGVDIGPVCFL
NT seq
4458 nt
NT seq
+upstream
nt +downstream
nt
atgcccggccgccgcccgctccgcctcgccgccgccctcgccatcctcctcctcgccgtt
gtcgccgcgcaggaccgagacctccccgaagcaggcagctgcctgcaggacgggcagacc
tatagcgataaggacgtgtggaagccggagccgtgccgtatctgcgtgtgcgacacgggg
accgtcctctgcgacgacatcatctgcgaggagctgcgggactgccccagccccgaaatc
cccttcggagagtgctgccccatatgtcccgctgagcagcccagcgggcaacctggcccc
aaggggcagaagggtgagcccggtgacattaaagatgttgtaggaccccgagggcctccg
ggaccgcagggccctgcaggtgagcagggacagcgaggggaccgcggcgagaagggggag
aagggtgctcccggcccccggggcagggatggagaacccggcacccctgggaaccccggc
ccccccggtccccccggccctcccggcccccccggcctcggcgggaacttcgcggctcag
atggccggaggcttcgatgaaaaggctggaggcgcacagatgggcgtcatgcagggaccc
atgggccccatgggaccccgtggcccccccggcccttccggtgctcctggtccccaaggc
ttccaaggcaaccccggcgagcccggcgagcccggcgctgctggtccgatgggtccccgg
ggacccccgggaccccccgggaagcccggcgatgatggtgagactggaaaacctggcaag
tccggagagcgcggggcccccggcccccagggtgctcgaggcttccccgggacccccggg
ctgcccggagtgaaaggacaccggggataccctggcttggatggtgccaaaggagaggca
ggagctcctggagccaagggtgaatccggctcccccggcgagaacggctcccccggcccc
atgggtccccgtgggctgcctggagagagaggacgacccggcccctccggcgctgcgggt
gctcgtggcaatgacggtctccccggcccggcgggacccccgggacctgtgggtccggcc
ggagcccccggcttccccggcgcccccggctccaagggtgaagctggacccaccggagca
cgaggccccgagggtgcccagggcccccgcggtgaatccggtacccccggctctcccggc
ccctccggtgcccctggtaaccccggcactgacggcattcccggcgccaagggctctgcg
ggtgctcccggcatcgcgggtgctccaggcttccccggcccccgcggcccacccggacct
cagggcgccaccggcccgctgggacccaagggacagacgggtgaacccggcatcgcgggc
ttcaaaggcgagcagggacccaagggcgagacgggccccgcaggaccgcagggagccccc
ggcccggcgggtgaggaaggcaagaggggagcccgcggtgaaccgggcgctgccggcccc
gtggggccacccggagagaggggcgctcccggcaaccgcggcttcccggggcaggacggg
ctggctggacccaagggagctccgggcgagcgcggccccgccggcctcgcggggcccaaa
ggagccaccggtgaccccgggcgccccggagagcccggcctgcccggagccaggggtctc
accggccgcccaggagatgctggacctcaaggcaaagtcggccccaccggtgcccccggc
gaggacggacgccccggcccccctggcccccagggtgctcgtggccagcccggtgtgatg
ggtttccctggtcccaaaggagccaatggcgagcctggaaaagctggtgagaaagggctc
cccggcgccccggggctgcgggggcttcctggcaaggacggtgagaccggagctgccggc
cccccgggacctgccggtcctgtgggagagaggggagagcaaggagcccccggtccctcc
ggcttccaggggctgcccgggccaccaggtccccctggagagagtggcaaacccggagac
cagggtgttcctggggaagctggtgcccccggtcttgtcggtcccagaggtgaacgcggc
ttccccggtgaacgaggctctcccggtgcacaagggctgcagggtccccgtgggctcccc
ggcacaccgggcaccgacggacccaagggtgcaaccggccccgctggccccaacggtgcc
cagggtcccccagggctgcaggggatgcccggggagcgaggagcagctgggatcgccggt
cccaagggagatcggggagacgtcggagagaagggacccgagggagctcctgggaaggac
ggcgcacgtggtctcacaggtcccatcggtccccccggccccgctggccccaacggcgag
aagggagaatccggcccccctggtccctccggtgctgccggtgcccgtggtgcccccggt
gagcgcggggagcccggtgcccccggtcccgctggattcgccgggcccccgggcgccgat
ggacaacccggagccaaaggggagcagggagagcccggccagaagggagacgctggagct
cccggtccccagggtccctccggcgccccgggcccgcagggcccgacgggtgtcaccggt
cccaaaggagcgcgcggagctcagggtcccccgggagcaaccggattcccgggtgccgcc
ggtcgagtgggacctcctggcccgaacggtaacccgggcccccccggcccccccggctcc
gctggcaaggacggacccaagggcgctcgcggtgacgcggggccccccggccgcgccggt
gaccccgggctccagggccccgccgggccccccggcgagaagggcgagcccggcgaggac
ggccccgcgggtcccgatggcccccccggcccccaaggcttggcaggacaacgcggcatc
gtggggctcccgggacagcgaggggagaggggcttccctgggctgccggggccgtcgggt
gaacctggaaaacaaggagctcccggctccgctggtgaccgcggcccccccggccccgtg
ggtccccccggtctgacaggtcctgctggtgaacccggccgcgagggtaaccccggctcc
gatggcccccccggaagagatggtgctgctggcgtgaagggtgaccgcggtgagaccggc
cccgtgggtgctcctggtgctcccggcgctcccggcgctcccggccccgtgggtcccact
ggcaaacagggagacagaggcgagacgggcgcacaaggtcccatgggtccctccggccct
gctggtgctcgaggcatgccgggtccccaaggacctcgcggtgacaagggagagacagga
gaggctggagagagggggctgaaaggccaccgtggcttcaccggcctgcagggtcttcct
ggaccacctggtccttctggagaccaaggtgctgctggtcctgcaggtccctccggcccc
aggggtccccccggccccgtcggtccctctggcaaggacggctccaacgggatgcccggc
cccatcggtccccccggtccccgcggtcgaagcggcgaaccaggacctgcgggtccccct
gggaacccgggtccccccggtcctcccggccccccgggcaccggtatcgacatgtcagcc
ttcgccgggctgggtcagacggagaagggccccgaccccatccggtacatgcgggcggac
gaggcgggcagcaacctgcggcagcacgacgtcgaggtggacgccacgctcaaggccctc
aacaaccagatcgagagcatccgcagccccgagggctccaagaagaacccagccaggacc
tgccgggacatcaagctttgccatcccgagtggaagagcggagattactggatcgacccg
aaccaaggctgcaccttggatgccatcaaagtcttctgcaacatggagactggtgagacc
tgcgtctaccccaaccccagaagcatccccaagaagaactggtggacgagcaagaccaaa
gacaagaagcacgtctggttcgcagagaccatcaatggtggtttccattttagctacggt
gacgaagacctggctcccaacaccgccagcatccagatgaccttcctgcgcctcctgtcc
accgaaggctcccagaacgtcacgtaccactgcaagaacagcatcgcctacatggacgag
gagacgggcaacctgaagaaagccatcctcatccagggctccaacgacgtggagatcaga
gccgagggcaacagcaggttcacctacagcgtcctggaggacggctgcacgaaacacact
ggcaaatggggcaagacagtgatcgagtaccggtcgcagaagacctcgcgcctgcccatt
gtggatattgcacctatggacattggtggagcggagcaggagttcggtgtggatatcggc
cccgtctgcttcttgtaa
DBGET
integrated database retrieval system
