Pezoporus occidentalis (night parrot): 134175490
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Entry
134175490 CDS
T11716
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
pocc Pezoporus occidentalis (night parrot)
Pathway
pocc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pocc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134175490 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pocc03019
]
134175490 (PATL1)
Messenger RNA biogenesis [BR:
pocc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
134175490 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
134175490 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
134175490
NCBI-ProteinID:
XP_062497513
LinkDB
All DBs
Position
Unknown
AA seq
772 aa
AA seq
DB search
MFRYQSLEDCPLDEDEDAFQGLGEEDEDIDQFNDDTFGAGAVDDDWQEAHERLAELEDKP
VASREQDGASTEDLDLLGDPEATLAERLTRLVIDSELEDPAIMQAVQTRGPAQQPGGLNS
SIWDSSAVLRRMRGPLLAQEMPSVSVLDYALPQRPPQPRDDERDPSERALPRRSSSPIIG
SPPVRAVPIGTPPKQAAVPSFNQQILCPKPVHIRATLQQRYPAPYGERMSPNQLCNVPNS
SLLGHPFPHSVSPVLTHLQRAQLLGGAQAGRMSPSQFARVSGLVGSPIPSVNPKLLQGRV
GQMMPPASGFRAFFGAPPAPPPPPPPPPSQLQHPPGPGSHLQSLRPQPQMFRPDTTHLHP
QHRRLLHQRQQQSRSQHRSLNGSVGDRGGHRSSHQEQMRKDPYANLMLQREKDWVSKIQM
MQLQSTDPYLDDYYYQNYFQKLEKLSAAEEVHGDGPKKERTKLITPQVAKLEHTYKPVQF
EGSLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRQTLVTIEKTYSLLLDVED
YERRYLLSLEGERPALMGERKQKICDMYDNLRGKAPGQDRPSDDHFMQIMCIRKGKRLVA
RILPFLSPEQAADVLMATARNLPFLIKKDAQDEVLPCLLRPFSHVLYHLPLGTVTSLVQQ
LTNLPQSAPAPAPTNLHLTAVLQNKFGLSLLYLVLSRGEELQSSDSSTELMQDNQWTELM
LMATRELLRIPQAALAKPVSTPSNLLSLFSRYVDQQKLNLLETKLHLVHGIR
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atgttccggtatcagtccttagaggactgcccgctggatgaggatgaagatgctttccaa
ggcctgggggaggaggatgaagatatcgaccagtttaatgatgacacgtttggagctggt
gctgttgatgacgactggcaggaggcccacgagcgcctggccgagctggaggacaagccc
gtggccagcagggagcaggatggggccagcactgaggacctggacctgctgggggacccg
gaggccacgctggccgagcggctgacccggctggtcatcgacagcgagctggaggaccct
gccatcatgcaggcagtgcagacccgcggccctgcgcagcagcctggagggctcaattcc
agcatctgggacagctcggccgtgctgcggcgcatgcggggcccgctcctcgctcaggag
atgccctcggtgtccgtgctggactatgctctgccccagaggcctccgcagccccgcgat
gacgagcgggacccatcggagcgggcgctgccgcggcgctcctcatcccccatcatcggg
agcccccctgtccgtgcggtccccatcggcacccccccaaagcaggctgctgtgcccagc
ttcaaccagcagatcctgtgtccgaagcctgtccacatccgagccaccctgcagcagcgc
taccccgctccctatggagagaggatgtcccccaaccagctctgcaatgtaccgaattcc
tccctcctgggccacccgttcccacacagcgtctcccccgttctcacccacctgcagaga
gctcagctgctcggaggagcccaggcgggccgcatgtcccccagccagtttgcccgggtc
tcgggcctggtggggagccccattccctccgtcaaccccaagctgctgcagggcagggtc
gggcagatgatgcctccagccagtggcttccgtgccttcttcggggctccccctgctcct
cctcctcctcctcctcctcctccctcgcagctccagcatcctccaggccccggctcccac
ctccagagcctcaggcctcagccccagatgttccgcccggacacgacccatctgcacccg
cagcaccggcggctcctgcaccagcggcagcagcagagccgaagccagcaccggagcctc
aacggctccgtgggggatcgagggggtcaccggagcagccaccaggagcagatgaggaag
gatccttatgccaacctcatgctgcagcgggagaaggattgggtgtccaagatccagatg
atgcagctccagagcactgatccctacctggatgactattactaccagaattacttccag
aagctggagaagttgtcagcagcggaagaagtccacggtgatggtcccaagaaggaacgc
actaaactcatcacacctcaggtggccaagctggagcacacctacaagccagtgcagttc
gagggctccctagggaagctcacggtctccagcgtcaacaaccctcggaagatgatcgac
gccgtggtgacgtcccgcagcgaggatgatgagacaaaggagaagcaggttcgggacaag
aggcgccagacccttgtcacgatcgagaagacatacagcctcctcctggacgtggaggac
tatgagagacgctacctcctgagcctggaaggggagaggccggccctgatgggcgagagg
aagcagaagatctgtgacatgtacgacaacctgagggggaaggcgcccgggcaggacagg
ccgagcgatgaccacttcatgcagatcatgtgcatccggaaagggaagcgcctcgtagcc
cgcatcctgcccttcctgtcccccgagcaagcggccgacgtgctcatggccacagccagg
aacctgcccttcctcatcaagaaggatgctcaggatgaggtgctgccctgcctgttgagg
cccttctcccacgtcctctaccaccttcccttggggacagtcaccagccttgtgcagcag
ttaacgaacctacctcagagcgcacccgcgccagcgcccaccaacctgcacctcactgct
gtgctccagaacaagttcgggctgtccctgctgtacttggtcctgagccgtggggaggaa
ctgcagagctcggacagcagcacggagctcatgcaggacaaccagtggacggagctgatg
ctcatggcgacccgggagctcctgcggatccctcaggcagctttggccaagccggtgtcc
accccttccaacctcctctccctcttctctcgctacgtggaccagcagaagctcaacctg
ctggagacaaaactgcacttagtgcacgggatccggtag
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