Paenibacillus odorifer: PODO_00955
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Entry
PODO_00955 CDS
T03326
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pod
Paenibacillus odorifer
Pathway
pod03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pod00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PODO_00955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pod03019
]
PODO_00955
03016 Transfer RNA biogenesis [BR:
pod03016
]
PODO_00955
Enzymes [BR:
pod01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PODO_00955
Messenger RNA biogenesis [BR:
pod03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PODO_00955
Transfer RNA biogenesis [BR:
pod03016
]
Prokaryotic type
tRNA degradation factors
PODO_00955
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
S1_RRP5
OB_RNR_1st
OB_PDCD11
Motif
Other DBs
NCBI-ProteinID:
AIQ71959
LinkDB
All DBs
Position
194061..196928
Genome browser
AA seq
955 aa
AA seq
DB search
MITQEILLDFMRETAYKPMTYEELVSHFALEDSEGFKKFEELLIELEQDGRIVLTRTARY
GVPERMDLLRGRLQAHAKGFAFLIPDDRDHPDVYIHANDLKGAMNGDIVLIRITSKSPSG
GRMEGEVVRIVKRGVLQTVGVFQNLETYGFVLPDDKRINRDIFIPKQSFKGAVDGQKVVV
RIVSYPEGRAAAEGEIIEILGHKDDPGVDILSIIRKHQLPEAFPAEVMDEADSAPDSITE
EEIAEQGRRDLRGLNIVTIDGEDAKDLDDAVNVQRLENGHYKLGVHIADVGYYVREGSEL
DKEAYDRGCSVYLVDRVIPMLPHRLSNGICSLNPQVDRLTMSCEMEFNEQMKVVKHDVFT
SVIRTKERMTYSNVRKILEDEDPELLERYSPLIDDFRLMKELAMKLRDARMRRGAVDFDF
EESKIIVDENGKAVDIVKRERSVAEQIIEEFMLAANETVAEHFHWLKVPFLYRIHEDPDP
EKLQNFMAFAANFGYHVKGRGNSVHPRALQDLLEQIQGTKEQTVISTMMLRSMKQAKYDA
ESTGHFGLAAEYYSHFTSPIRRYPDLVIHRVMREVIENGGALTQKRHDYLSSRMPDIAQQ
SSERERVAVEAERDTEQLKKAEYMQDKVGEEFEAMVSSVTSFGMFIELDNTVEGLIRLSA
MSDDYYHFDEGHMALIGERTSRVFRIGDEVKIRVAKVNMDDHTIDFELVDMKPRAPGEHR
GGGFAGGRGGKGGRSGGGFIKPAGGKGAAGKGRGGKGKPGGAAAGVGKGKPGAGVRAGDG
PREAAGVGAAGGRGKRKRGREAGEDASRVVAAPGAERGGEAGGNAGAPRERSSGRGRGGD
TGGAGGGRGISFGFGSGKGGYGAPASDSSGGEARGVDGSTKFRSREDRGGNFGGGEGRNG
APTGKGRRKKKTKGGVFIGQSVTPGNVETSEQVTSKRSDNNGGAPEGAPRKRKKK
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atgataacacaagaaatattactcgatttcatgcgggaaactgcatataaaccaatgact
tatgaagagctggtgagtcattttgctctagaggatagcgaggggtttaaaaagttcgag
gaactgctgattgaattagagcaggatggaagaattgtattaacccgtactgcacgttat
ggcgtgccagaacggatggatttgctgcgtggacgtttacaagcacatgcgaagggtttt
gcttttctaatcccggatgatcgtgatcatcctgacgtatatatccatgcaaatgatctt
aagggagctatgaatggcgatatcgttctgattcgtattacctctaaaagtccgtccggc
ggacgtatggaaggcgaagtagtacgtattgtaaaacgtggcgtgttgcagacggtaggt
gtatttcagaacctggagacctatggttttgtgctgcctgatgataagcggattaatcgt
gatatttttattccgaaacaatcctttaaaggtgctgttgatggtcaaaaggtcgttgtg
cgaattgtgagttatccggaaggccgagcagcggcagaaggtgaaattattgagattctc
ggacataaggatgatccgggtgttgatattctttccattatccgcaaacatcaattgcct
gaggcatttccagctgaagtgatggatgaagccgatagcgctcctgattcaattacagaa
gaggagattgcggagcaaggaagacgcgacctgcgcggactgaacattgttacgattgat
ggcgaagatgctaaggatttggatgatgcggtaaacgtacagcgcttggagaatggacat
tacaagctgggcgtccatatagcagacgtaggttattatgtgcgtgaaggctctgagctg
gataaagaagcctatgaccgcggttgtagtgtgtatttagtagaccgggttattccgatg
ctgccgcaccgtctatcgaacggaatttgcagcttgaatccacaggtagaccggttaaca
atgtcctgtgaaatggagtttaacgagcaaatgaaggttgtgaagcacgatgtctttacg
agcgtgattcgcaccaaagagagaatgacttactccaatgttcgtaaaattctcgaagac
gaagatccagagctgctggaacgttatagtccactaattgacgatttccgcctcatgaaa
gaattggcgatgaagctacgcgatgcgcggatgcgccggggtgcggttgattttgatttt
gaagagagcaaaatcatcgtggatgagaacggcaaggctgtagatatcgtgaagcgtgaa
cgttctgtagctgaacagattatcgaggagttcatgctggcggcaaatgaaacagtagct
gaacatttccactggttgaaggttccgttcctttaccggattcacgaagatccagaccca
gagaagctgcaaaatttcatggcttttgcggccaatttcggatatcacgtcaagggtcgt
ggcaattcggttcatccacgtgctttgcaggatttgttggagcaaatccaaggcacaaag
gagcagacggtcatcagtacgatgatgctgcgttctatgaagcaggcaaagtatgatgcg
gagagcacgggccatttcggactggctgcggaatactattctcacttcacttctccgatt
cgccggtaccccgatttggtcattcaccgcgtaatgcgtgaagtgattgagaatggaggg
gcattgacccagaaacggcatgattatttgtctagccggatgcctgacattgctcagcag
tcttcggaacgcgagcgtgtggcggtagaagctgaacgcgatacggagcaactgaagaaa
gcagaatacatgcaggataaagtaggcgaggaattcgaggctatggtcagcagtgtgacc
agcttcggaatgttcatcgagctggataataccgtcgaaggtcttattcgtctcagtgca
atgagcgacgattattatcatttcgacgaaggtcatatggcgctcattggcgagcgcaca
tcgcgtgtgttccgtattggtgacgaggtgaagatccgagtcgccaaagtaaatatggat
gaccacacgatcgatttcgagttggtcgacatgaagccacgcgcgccaggcgagcaccgc
ggtggtggctttgcgggcggccgcggaggcaagggcggccgctcgggcggcggcttcatt
aagccggccgggggcaaaggcgccgcgggcaagggacgcggcggtaaaggcaagcccggc
ggcgctgctgcaggcgtgggcaagggcaagccgggcgcaggtgtgcgcgccggtgatggg
ccgcgcgaagcggccggtgttggcgcagcgggcggacgcggtaagcggaagcgcgggcgc
gaggccggcgaggatgcgagccgggtagttgctgcgccgggcgcagagcgcggaggcgaa
gccggcggcaacgcaggcgcgccgcgtgagcgcagcagcgggcgaggccgcggcggagac
accggcggtgccggtggtggacgcggcatcagcttcggctttggctccggcaaaggcgga
tacggcgctcctgcgtccgactcctccggcggcgaagcgcggggcgtggacggcagcacg
aagttccgcagccgcgaggatcgcgggggtaactttggcggtggagaaggccgtaacggc
gctcctacaggcaaaggccgccgcaaaaagaaaaccaagggcggggtgttcatcggccag
tccgtgacaccaggcaacgtagagacatctgagcaagtcacttctaaacgaagtgacaat
aatggcggcgctccagaaggagcaccacgtaagcgtaaaaagaaataa
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