Paenibacillus odorifer: PODO_09515
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Entry
PODO_09515 CDS
T03326
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pod
Paenibacillus odorifer
Pathway
pod03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pod00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PODO_09515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pod03400
]
PODO_09515
Enzymes [BR:
pod01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
PODO_09515
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
PODO_09515
DNA repair and recombination proteins [BR:
pod03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PODO_09515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Ribosomal_S13
DZR
RNHCP
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AIQ73472
LinkDB
All DBs
Position
2198885..2199721
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AA seq
278 aa
AA seq
DB search
MPELPEVETVKRTLNKLVNGKQIENVTVRLARIIQRPDDIQAFAHLLAGHSIVKVERRGK
FLRIVLDGLVLVSHLRMEGRYGLFSNDDPLDKHTHVIFHFTDGTELRYTDVRQFGTMHLF
QMGEDLQLPPLNKLGQEPLEPSFTPERFKQIVSGKSTKIKSLLLNQEYIVGIGNIYVDES
LHRAGIHPEDSAKSLTDNQLDKLHHAIVSTLAEAVNAGGSSVKSYVNGQGESGTYQQQLL
IYGRKDQPCSNCGTMIEKTVVGGRGTHYCPNCQRPTVN
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atgccggaattaccggaagtagagacagtcaagagaacacttaataagttagttaatgga
aagcagatagagaatgtaaccgtccggttggcgcggattattcagcgtccggatgatatt
caggcttttgcccacctgctggcaggtcatagcattgttaaagttgaacgaagaggaaag
tttttgcgtattgtgctggatggtctggtgcttgtgtcacatttgcggatggaaggccgt
tacggacttttttcaaatgatgacccactggacaagcatacacatgtgatttttcatttt
acggatggaactgagctgcgttacacggatgttcgccagttcggtacgatgcatcttttt
cagatgggagaagatcttcagctgccgcctttaaacaagctggggcaggagccgctggag
ccttcttttacaccggagaggtttaagcagatcgtgtcaggtaaaagcaccaaaattaaa
tcgctgctgcttaatcaggaatatatcgtcggcatcggcaatatttatgtagatgagtcg
ttgcaccgtgcgggcatccatcctgaagacagcgccaaatcgctcacggacaatcaattg
gacaagctgcatcatgccattgtaagcacgctggccgaagcggttaacgccggaggttca
tctgttaagtcatatgttaatggccaaggtgagagcggtacgtatcagcagcagctattg
atttacggtcgtaaggatcagccgtgcagtaactgtggaacgatgattgagaagacggtt
gtaggcggtcgtggcacgcattattgtccaaattgccagcgcccgactgttaactga
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