Paenibacillus odorifer: PODO_10285
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Entry
PODO_10285 CDS
T03326
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pod
Paenibacillus odorifer
Pathway
pod03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pod00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PODO_10285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pod03019
]
PODO_10285
03009 Ribosome biogenesis [BR:
pod03009
]
PODO_10285
Enzymes [BR:
pod01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PODO_10285
Messenger RNA biogenesis [BR:
pod03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PODO_10285
Ribosome biogenesis [BR:
pod03009
]
Prokaryotic type
rRNA helicases
PODO_10285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DeaD_dimer
CMS1
AAA_22
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
AIQ73609
LinkDB
All DBs
Position
2372651..2374303
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AA seq
550 aa
AA seq
DB search
MKTFAEFGLEPKVLQAITELGFEEATPIQEQSIPLALTGSDLIGQAQTGTGKTAAFGIPL
ISKINREDEKILALIMAPTRELAIQVSEEIGKLSRFKGLRSLAIYGGQDIGRQIRGLKKK
PQIIIGTPGRLLDHINRKTIRLDDVQTVVLDEADEMLDMGFMEDIQTILKLVPVERQTML
FSATMPPNIQRLAQQFLNNPQHVSVIPKQISAPLIDQAYVEVPERQKFEALSRLIDMESP
ELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDVA
ARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREIDHLHLIERVTR
HRITRKPLPTMAEAIEGKQRVTAERLLEVVESGELNEYKGISIQLLEQYDSVQLLSAAMK
LLTGDKKDSAIELTPEDPIRAKRRGGKNDIRSGRKPNGGYGGNRGTSGGSGSGGGYRGNR
DNNGGGSRGGYSSGGSNYGSGSGGYGGGYKGNRDGAPARDGSANRSAERKPYTRPSSTST
RPAKREDFDN
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaacattcgcagaatttggcttggagccaaaagtgctacaagcaatcacagagtta
ggatttgaggaggcaacaccgatacaggaacagtcgatcccattagcattgactgggtcg
gatctgatcggtcaagctcagactggtacaggtaagactgctgcttttggtatccccctc
atttcgaagattaaccgtgaagacgaaaaaatcttggcccttattatggcaccaacacgt
gagttggccatccaagtgtcagaagaaattggcaaactaagccgtttcaaaggtcttcgc
tcgttggcgatttatggcggacaggatattggacgtcaaatccgtggattgaaaaagaaa
ccacaaatcattattggtacacctggtcgtttgctcgatcacatcaaccgtaaaacgatc
cgtttggatgatgttcaaaccgttgtattggatgaagcagatgaaatgctggatatgggc
tttatggaagatattcagactatcctgaagctcgttcctgtagaacgtcaaaccatgttg
ttctctgctacaatgccaccaaacattcaacgcctagctcaacaatttcttaacaacccg
caacatgtctccgttattccgaaacaaatcagtgccccactgattgatcaagcttatgtg
gaagtgcctgagcgtcaaaagtttgaagctcttagtcgtttgattgatatggaatcacct
gaattagctatcgtattcggacgtactaagcgccgggttgatgagcttgctgaagctttg
caaaaacgcggatattctgctgatggattgcatggtgacttgtcacagaaccaacgtgat
gctgtaatgcgtaaattccgtgatggcagcattgacgtgctggtagctactgacgtagcg
gcacgtggtctggacgtatccggcgtaactcacgtaattaactttgacttgccacaagat
cctgaaagctatgtacaccgtattggtcgtacaggacgcgcaggtaaagaaggtacggct
tggtcattcgttactccacgcgaaattgatcacctgcatttgatcgaacgtgttactcgt
caccggattactcgtaaacctttgccaacaatggctgaagctattgaaggtaaacaacgc
gttactgctgagcgtttgcttgaagtggtagaaagcggagagttgaacgagtacaaagga
atttctattcaattgcttgagcaatatgattccgtacaattgttgtccgcagctatgaag
cttctcactggcgacaagaaggattccgcaattgaattgactcctgaagatccaattcgt
gctaaacgtcgtggtggcaaaaacgatatccgcagtggtcgtaaacctaatggtggttat
ggcggaaaccgtggtacttccggtggcagcggtagcggtggcggataccgtggtaaccgt
gataataacggtggcggtagtcgtggtggctatagcagcggtggcagcaactacggtagc
ggcagtggcggctatggcggtggctataaaggcaaccgtgatggcgcaccagctcgtgac
ggtagtgcaaaccgcagcgcagagcgtaaaccatacactcgtccaagcagcacgagcact
cgtcctgcaaaacgtgaagatttcgataattaa
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