Paenibacillus odorifer: PODO_18335
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Entry
PODO_18335 CDS
T03326
Name
(GenBank) RNA polymerase sigma factor SigD
KO
K02405
RNA polymerase sigma factor FliA
Organism
pod
Paenibacillus odorifer
Pathway
pod02020
Two-component system
pod02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pod00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PODO_18335
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PODO_18335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pod03021
]
PODO_18335
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
pod02035
]
PODO_18335
Transcription machinery [BR:
pod03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PODO_18335
Bacterial motility proteins [BR:
pod02035
]
Flagellar system
Flagellar assembly proteins
Stator
PODO_18335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
UPF0122
HTH_38
Sigma70_ECF
CagE_TrbE_VirB
PhyR_sigma-like
HTH_23
Motif
Other DBs
NCBI-ProteinID:
AIQ75059
UniProt:
A0A1R0WS88
LinkDB
All DBs
Position
complement(4124261..4125049)
Genome browser
AA seq
262 aa
AA seq
DB search
MNERKASQLETDELWEQWKEHRDPEAKKKLIESYLHIVDYVSSRLAVGLPKNVSKDDLAS
NGVMGLIDAIEKFDYKRGLQFQTYASWRVRGAILDSLRQSDWVPRSVREKAKKIEDAYQQ
LEQKHLRSVSDEEMSQYLNISELEFQNMLQDVAVMSLCSLEDPIREEESETRMSILVDDK
AKNPDSKVNEFYLREALTKGIEKLTVKERTVVSLLYYEDLSLSEIAEVMSLSPSRISQLH
SKAILRLRGTLEKNRDLLMQND
NT seq
789 nt
NT seq
+upstream
nt +downstream
nt
ttgaacgagcgtaaagcttctcaattggaaactgacgagctatgggaacagtggaaagaa
cacagagaccctgaagccaaaaagaagctgatagagagttatctccatattgttgattat
gtatccagtcgtttggctgtgggattaccaaaaaatgtatcaaaagatgatttagccagc
aatggggttatgggactaattgatgcgattgagaaattcgactacaaacgaggattgcaa
tttcagacctatgcgtcctggcgtgtgcgtggtgcgatattagattcattacgccaaagt
gattgggtacctagatccgttcgggaaaaagctaaaaaaatcgaggacgcttatcagcag
ctggagcagaagcacttaaggtcagttagtgacgaggaaatgagccaataccttaatatt
agtgaactggaatttcaaaatatgttgcaggatgtggctgtgatgtcactttgctcactg
gaagacccgattcgtgaagaggaatcagagacccgaatgtccatactggtggacgataaa
gctaagaatccggatagcaaggtaaatgaattctacttgcgcgaagcgctcaccaaaggt
attgagaaattaacggtgaaagaaaggaccgttgtgtcccttttatattatgaagattta
tctttaagtgagattgctgaggtcatgtcgttatctccttcaagaatttcgcagttgcat
tccaaagctattttgcggctgaggggaacgctcgagaagaaccgtgatctccttatgcag
aacgattaa
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