Paenibacillus odorifer: PODO_18515
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Entry
PODO_18515 CDS
T03326
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pod
Paenibacillus odorifer
Brite
KEGG Orthology (KO) [BR:
pod00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pod03032
]
PODO_18515
03400 DNA repair and recombination proteins [BR:
pod03400
]
PODO_18515
Enzymes [BR:
pod01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PODO_18515
DNA replication proteins [BR:
pod03032
]
Prokaryotic type
DNA Topoisomerases
PODO_18515
DNA repair and recombination proteins [BR:
pod03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PODO_18515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
Zn_ribbon_RPB9
Toprim_3
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
AIQ75094
UniProt:
A0A1R0Z5L1
LinkDB
All DBs
Position
complement(4156472..4158571)
Genome browser
AA seq
699 aa
AA seq
DB search
MADALVIVESPAKAKTIGKYLGSKYIVKASMGHIRDLPKSQIGVEVENDFSPKYITIRGK
GSILKELKDASKKVKKVYLAADPDREGEAIAWHLAHALDLDNTQECRVVFNEITKQAVKD
AFKTPRKINMDLVNAQQARRILDRLVGYKISPLLWKKVKKGLSAGRVQSVAVKIIMDREN
EISAFVPTEYWSITAKLGIRDSVFEAKFHKLNGVKKELNQESDVQEVLEAIKNASFKVSD
VKEKERQRHPSAPFTTSSLQQEAARKLGFRAAKTMSVAQQLYEGVELGKEGTVGLITYMR
TDSTRLSVTAQDEAKELITAKYGEKFLPESPRQYSKKAAGAQEAHEAIRPTSALREPEMV
KEFLSRDQFRLYKLVWERFVSSQMSSALLDTLSVDIAAGTATFRAVGSKVSFPGFMKVYV
EGNDDGTTDEDKYLPPLQAGDALNKQEIEPKQHFTQPPPRYTEARLVKTLEELGIGRPST
YAPTLETIQKRGYVAIEEKKFMPTELGELVIEQMEQFFPEILNVEFTANMEGDLDHVEEG
SEDWVKVLAEFYESFEKRLVFAEEEMKEIEIEDEVSDEICEKCGKPLVYKLGRFGKFLAC
SGFPDCRNTKPIIKDIGVTCPKCHEGKVVERRSKKGRVFYGCDQYPGCDFVSWDRPSIKP
CPSCGSWMIEKRNKQGTKLQCTSCDHTEAVLDNEEELAD
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggcagatgcattagttattgtcgagtcgcctgcaaaagcgaagacaattggcaaatat
ctaggtagtaaatatattgtaaaggcatcaatgggacatattagagatctaccgaagagt
caaattggtgttgaggtggagaatgatttcagtcccaaatatattactatccgcggtaaa
ggatctatattgaaggaattgaaagacgctagtaaaaaagttaaaaaagtttatctcgca
gctgaccccgaccgcgaaggggaagcaattgcttggcatttggcgcatgcgctggattta
gataatacacaagaatgcagagttgtttttaatgagatcaccaaacaagcggtaaaagat
gcttttaagacaccgcgtaagattaatatggatctcgtgaatgcacagcaggctagacgt
attctggatcgactggtagggtacaagattagccctctattatggaagaaagtcaaaaaa
ggtttatctgctggacgtgtacaatccgttgccgtgaagatcattatggatcgtgagaat
gaaatctccgcttttgtacccaccgaatattggagcataacagccaagcttggaatacgg
gattccgtctttgaagctaagtttcataagctgaatggtgtgaaaaaagaactgaaccag
gaaagtgatgttcaggaggttcttgaagccattaagaacgcatcttttaaggtgagtgat
gtgaaggagaaggaaagacaacgtcatccttcggctccttttaccaccagctccctacaa
caggaagcagcccgtaagcttggattccgtgccgctaagacaatgtctgttgcacagcag
ctatacgaaggtgtggaactcggtaaagaaggtaccgtaggtttgatcacttatatgcgt
acagactccacgcgtctctctgtcaccgctcaggatgaagctaaagagcttataacagct
aagtatggtgagaagttcttgccagaatccccacggcagtattctaaaaaggcagctgga
gcacaggaagcgcatgaagcgattcgtcctacctcggcattacgcgaacctgaaatggtc
aaagagttcttgagccgtgatcaattccgtctctacaagctagtgtgggagcggttcgta
tcaagtcagatgtcttctgccctgctggatacgctttcggtcgatattgctgcaggtact
gctacattcagagctgttggttcgaaggtttcattccccgggttcatgaaggtttatgta
gaaggcaacgatgacggaactacagatgaagacaagtatttgccgccgcttcaagcggga
gatgctttaaataagcaggagatcgagcctaagcagcactttacacaaccgcctccacga
tatacggaagcaagacttgtaaagacgcttgaggagctgggtataggccgtccaagtaca
tatgccccaacgctggaaaccatccagaagcgtgggtatgtggctattgaagagaaaaaa
ttcatgccaaccgaacttggcgagcttgttatagagcagatggagcaatttttcccggaa
atcctaaacgttgagttcacggcgaacatggaaggggatcttgaccatgtggaagagggc
tcagaagactgggtaaaggttcttgcagagttttacgaatcgtttgagaagcgtttggtg
ttcgcggaagaagagatgaaagaaattgagattgaagatgaagtctctgatgagatctgt
gagaaatgcggcaaacctctcgtgtataagctgggtcgctttgggaaattcctagcatgc
tctggctttccggattgccgaaacacgaaaccgattatcaaggatattggcgtaacttgc
cctaaatgtcatgaaggtaaggttgtggagcgacgcagcaaaaaagggcgtgttttctat
ggctgcgatcagtaccctggttgtgatttcgtttcatgggatagaccttctataaaacca
tgtccatcatgtggatcttggatgattgagaaacgtaataagcaaggaaccaagctacaa
tgtacgtcttgtgatcatacagaggcggttctagacaacgaagaagaattagcagattaa
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