Paenibacillus odorifer: PODO_28170
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Entry
PODO_28170 CDS
T03326
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
pod
Paenibacillus odorifer
Pathway
pod03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pod00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PODO_28170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pod03400
]
PODO_28170
DNA repair and recombination proteins [BR:
pod03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PODO_28170
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PODO_28170
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_22
UvrD-helicase
AAA_7
AAA_16
AAA_5
AAA
AAA_19
DUF87
nSTAND_NTPase5
AAA_25
fvmX5
DnaB_C
Motif
Other DBs
NCBI-ProteinID:
AIQ76774
UniProt:
A0A1R0YXW7
LinkDB
All DBs
Position
complement(6250605..6252596)
Genome browser
AA seq
663 aa
AA seq
DB search
MSDIVVSTKTFELESEYTPQGDQPHAIDELLQGIRQGKKHQTLLGATGTGKTFTVAQVIS
KLNRPTLVIAHNKTLAAQLASEFKEFFPNNSVDYFVSYYDYYQPEAYIPSSDTYIEKDSS
INEEIDKLRHSATSSLFERRDVIIVASVSCIYGLGSPMEYGSLLLSLRVGMEKPRNEILS
RLVDIQYQRNDINFVRGTFRVRGDVVEIFPASQGEHAIRVELFGDEIERITEIDVLTGEL
IGERDHVAIFPASHFVTKEETMRVAIVNIERELEERLTVLRDAGKLLEAQRLEQRTRYDI
EMMKEVGFCSGIENYSGPLTFREPGATPYTLMDYFPDDMLIVVDESHVTLPQIRAMYNGD
RARKTVLVEHGFRLPSALDNRPLQFEEFEDKVNQIIYVSATPGPYEMEHCETMVQQIIRP
TGLLDPIIEVRPTEGQIDDLISEIRDRVERDERVLVTTLTKKMSEDLTDYFKEIGIKVRY
MHSDIKTLERMAILRDLRLGTFHVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSL
IQTIGRAARNSEGRVIMYGDRITDSMEKAMSETSRRRAIQIAHNEKHGITPTTINKKVRD
IIEATKVAESKADYLTGVGGKMNKKEKQSLIQRLEAEMKDAAKNLQFERAAELRDALLEL
RAE
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatattgtcgtcagtacgaagacttttgaattggagtccgagtatacaccccag
ggcgatcagcctcatgccatagatgaattactacaaggcatccggcagggtaagaagcac
cagacgctgctgggagcgacaggtacagggaagacctttactgtcgcgcaagttatttcc
aaattaaatcgccccacgctggttattgcgcataacaagacactggctgcccagctggca
agtgagtttaaggagtttttcccgaataattcggtagactatttcgtcagctactacgac
tattaccaaccagaggcgtacattccctcctccgatacttatattgagaaagattccagc
attaacgaagagattgataaacttcgccactccgcgacaagctccttgttcgaacggcgt
gacgttattattgtagcgagtgtgtcttgtatttacggtctcggttcaccaatggaatac
ggaagcttgctgttgtccttgcgggttgggatggagaagccgcgcaatgagattctgagc
agactggtggatattcaataccagcgcaatgatatcaattttgtacgcggaacattccgt
gtacgtggtgatgtggttgaaatcttcccggcatctcagggtgaacatgcgattcgcgtt
gaattgtttggcgatgagattgagcggatcactgaaattgatgttttaacgggtgaattg
atcggtgaacgcgaccatgtcgccatttttccggcttctcactttgttaccaaggaagaa
acgatgcgtgtagcaatagtcaatattgaacgggagctggaagagcggctgaccgtgctt
cgtgacgcaggcaagcttctggaagcgcaacgtctggaacaacggacacgttacgacatt
gagatgatgaaggaagtgggtttctgttcggggattgagaactattccgggccactaacc
ttcagggagccaggagcaactccatatacgttaatggattattttcctgatgatatgtta
attgtcgtagatgaatcccatgttacccttccgcaaattcgggcgatgtataacggtgac
cgggcgcgtaagacagtgttggtagagcatggtttccgtctgccttctgcgctggataac
cgtccgcttcagttcgaagagttcgaagataaagtgaaccagatcatttacgtttctgcg
acacctggaccttatgaaatggaacactgcgaaactatggtgcagcagattatccgtccg
actgggctattggatccaatcattgaggttcgtcctacagaaggccagatcgatgatctg
attagcgaaatccgtgaccgggtcgaacgtgatgaacgtgtactcgttaccactttgacg
aagaagatgtcggaggatctgacagactactttaaggaaatcggtattaaggttcgttat
atgcactctgacatcaaaacactggaacggatggcgatcttgcgggatcttcgtctcggt
acgttccatgtcctggtagggattaacctcctgagagaaggtctcgacttaccggaggta
tctttagttgcaattctcgatgccgataaagaagggttccttcgttccgaacgttcacta
attcagacgattggccgtgcggctcgtaactctgagggtcgtgtaatcatgtatggtgat
cggatcactgattcgatggagaaagcgatgagcgaaacatcgcgccgtcgcgccattcag
attgctcataatgagaaacatggcattaccccaaccaccattaataaaaaagtgcgtgac
atcatcgaggcgacgaaggttgctgagtctaaagccgattatctcacaggtgttggtggc
aagatgaataagaaagaaaaacaaagtctgatccaacgtctggaagctgaaatgaaggac
gctgccaagaacctgcaattcgaacgcgcggcagagctgcgcgacgcattgctggagctt
cgggctgagtaa
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integrated database retrieval system
